YlipolyticaCLIB122

What was searched

Routing

Whole phylum. No curated family covers this lineage, so every family of the genome's phylum was searched. Family labels are less reliable here.

Families searched

Ascomycota:MATsc, Ascomycota:MTL

Genetic code

1

Taxonomy

local NCBI taxonomy snapshot 2026-10-01

Families searched but not called

Withheld candidate loci 91

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (84); too few of the family's genes found (7).

Provenance

Genome file

YlipolyticaCLIB122.genome.fasta

Assembly

6 contigs · 20.5 Mb · N50 3.6 Mb

Genome SHA-256

c3edec393cb24b97d85bf27c4ecf49028ab5a1f514f4c23bfa9978e09895a3e1

MATPredict

0.8.1 (v0.8.1, 3a62e6302b)

Database

86f18d232e4fe95d · 185 records

Taxonomy

local NCBI taxonomy snapshot 2026-10-01

Parameters

phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 3243772, 'routing_taxid_rank': 'order', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'order taxid 3243772', 'routed_by': 'order taxid 3243772 (phylum_fallback)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0

Run started

2026-11-07T01:49:05Z

Run time

26 s

Files

detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.