XarbusculaCBS124340 Xylaria arbuscula CBS 124340

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, MU279353:474768-488011

MATPredictFungiDBSLA2 (flanking_conserved) MU279353:474768-478284 + identity 81.0SLA2COX13 (flanking_conserved) MU279353:479050-479866 - identity 65.0COX13APN2 (flanking_conserved) MU279353:480431-482586 + identity 86.4APN2MAT1-2-1 (core_MAT) MU279353:486590-488011 - identity 48.9MAT1-2-1F4678DRAFT_64490 470402-472949 +: anaphase-promoting complex subunit 5-domain-containing proteinF4678DRAFT_64490F4678DRAFT_64489 472950-473988 -: complex I intermediate-associated protein 30F4678DRAFT_64489F4678DRAFT_430674 474286-478740 +: ANTH domain-containing proteinF4678DRAFT_430674F4678DRAFT_430676 478760-480014 -: cytochrome c oxidase, subunit VIaF4678DRAFT_430676F4678DRAFT_430678 480141-482759 +: DNA lyaseF4678DRAFT_430678F4678DRAFT_478962 483889-485404 -: unspecified productF4678DRAFT_478962F4678DRAFT_460793 486590-488011 -: unspecified productF4678DRAFT_460793F4678DRAFT_430685 490172-495781 -: unspecified productF4678DRAFT_430685470 kb472 kb474 kb476 kb478 kb480 kb482 kb484 kb486 kb488 kb490 kb492 kbMU279353
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved474768-478284 +annotatedF4678DRAFT_430674ANTH domain-containing proteinF4678DRAFT_430674 covers 100% of it on the same strand
COX13flanking_conserved479050-479866 -annotatedF4678DRAFT_430676cytochrome c oxidase, subunit VIaF4678DRAFT_430676 covers 100% of it on the same strand
APN2flanking_conserved480431-482586 +annotatedF4678DRAFT_430678DNA lyaseF4678DRAFT_430678 covers 100% of it on the same strand
MAT1-2-1core_MAT486590-488011 -annotatedF4678DRAFT_460793unspecified productF4678DRAFT_460793 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
F4678DRAFT_478962483889-485404 -unspecified product