VgallopavaCBS43764 Verruconis gallopava strain CBS 43764

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, KN847532:1005911-1031087

MATPredictFungiDBCOX13 (flanking_conserved) KN847532:1005911-1006457 - identity 54.7COX13APN2 (flanking_conserved) KN847532:1006767-1008804 + identity 86.4APN2MAT1-1-4 (core_MAT) KN847532:1009604-1009765 + identity 29.63MAT1-1-4MAT1-2-1 (core_MAT) KN847532:1011049-1011426 - identity 55.77MAT1-2-1MAT1-1-2 (core_MAT) KN847532:1030989-1031087 + identity 33.333MAT1-1-2PV09_01795 999902-1001587 -: unspecified productPV09_01795PV09_01796 1001748-1002978 +: CIA30 domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0D2AMA3]PV09_01796PV09_01797 1003246-1005845 +: Anaphase-promoting complex subunit 5 [Source:UniProtKB/TrEMBL;Acc:A0A0D2B9G4]PV09_01797PV09_01798 1005659-1006524 -: Cytochrome c oxidase subunit [Source:UniProtKB/TrEMBL;Acc:A0A0D2AMZ3]PV09_01798PV09_01799 1006673-1008939 +: Endo/exonuclease/phosphatase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0D1XYL5]PV09_01799PV09_01800 1009036-1010256 +: unspecified productPV09_01800PV09_01801 1012212-1012909 +: unspecified productPV09_01801PV09_01802 1013476-1016642 +: SMP-LTD domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0D2AMZ7]PV09_01802PV09_01803 1016813-1018279 -: unspecified productPV09_01803PV09_01804 1019083-1020843 +: hypothetical protein, variantPV09_01804PV09_01805 1020975-1021855 -: unspecified productPV09_01805PV09_01806 1021860-1024243 -: Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A0D2AN03]PV09_01806PV09_01807 1024478-1025991 +: unspecified productPV09_01807PV09_01808 1025897-1028388 -: COP9 signalosome complex subunit 2 [Source:UniProtKB/TrEMBL;Acc:A0A0D1Z4K1]PV09_01808PV09_01809 1028807-1030834 +: unspecified productPV09_01809PV09_01810 1030607-1031746 -: unspecified productPV09_01810PV09_01811 1031843-1032910 +: S4 RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0D1XYN7]PV09_01811PV09_01812 1032850-1034766 -: unspecified productPV09_01812PV09_01813 1034889-1036006 +: unspecified productPV09_01813PV09_01814 1035835-1037544 -: unspecified productPV09_018141004 kb1008 kb1012 kb1016 kb1020 kb1024 kb1028 kb1032 kb1036 kbKN847532
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved1005911-1006457 -annotatedPV09_01798Cytochrome c oxidase subunit [Source:UniProtKB/TrEMBL;Acc:A0A0D2AMZ3]PV09_01798 covers 100% of it on the same strand
APN2flanking_conserved1006767-1008804 +annotatedPV09_01799Endo/exonuclease/phosphatase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0D1XYL5]PV09_01799 covers 100% of it on the same strand
MAT1-1-4core_MAT1009604-1009765 +annotatedPV09_01800unspecified productPV09_01800 covers 100% of it on the same strand
MAT1-2-1core_MAT1011049-1011426 -novel—no FungiDB gene overlaps this MATPredict gene
MAT1-1-2core_MAT1030989-1031087 +partialPV09_01810unspecified productPV09_01810 overlaps 100% but on the opposite strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
PV09_018011012212-1012909 +unspecified product
PV09_018021013476-1016642 +SMP-LTD domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0D2AMZ7]
PV09_018031016813-1018279 -unspecified product
PV09_018041019083-1020843 +hypothetical protein, variant
PV09_018051020975-1021855 -unspecified product
PV09_018061021860-1024243 -Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A0D2AN03]
PV09_018071024478-1025991 +unspecified product
PV09_018081025897-1028388 -COP9 signalosome complex subunit 2 [Source:UniProtKB/TrEMBL;Acc:A0A0D1Z4K1]
PV09_018091028807-1030834 +unspecified product
PV09_018101030607-1031746 -unspecified product