MATPredict · mating-type report

Ureesii1704

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:07 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on CH476615MAT1-1 locus: genes from left to right on CH476615, 850,079 to 860,229: APN2 (conserved flank, plus strand); MAT1-1-4 (core MAT gene, plus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).850 kb852 kb854 kb856 kb858 kb860 kb← 849.6 kb more to contig endcalled locusAPN2: conserved flank, 850,079–851,773 (+), identity 84.2%, search hit onlyAPN2MAT1-1-4: core MAT gene, 852,401–853,119 (+), identity 60.5%, search hit onlyMAT1-1-4MAT1-1-1: core MAT gene, 854,098–855,328 (+), identity 70.3%, search hit onlyMAT1-1-1SLA2: conserved flank, 856,813–860,229 (-), identity 94.3%, search hit onlySLA2
Gene order on CH476615. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on CH476615, 849,571 to 860,736UREG_00453 850,079-851,773 (+): Endo/exonuclease/phosphatase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:C4JE29]UREG_00453UREG_00454 852,401-853,119 (+): unspecified productUREG_00454UREG_00455 854,098-855,328 (+): Alpha box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:C4JE31]UREG_00455UREG_00456 856,813-860,229 (-): SLA2 proteinUREG_00456
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
CH476615:850,079–860,229 · 10.2 kb
Own genes
CH476615:850,079–860,229 · 10.2 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
4 of 4 gene hits
Nearest contig end
850.1 kb
Region (samtools)
CH476615:850079-860229
Idiomorph scores
  • MAT1-1 503.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
APN2conserved flankhit onlyDIAMOND, proteome84.2cov 15.8%6.3e-222618 bits850,079–851,773 +–2903220_liq80xsp_MAT_combinedUREG_00453
MAT1-1-4core MAThit onlyDIAMOND, proteome60.5cov 72.0%3.8e-76223 bits852,401–853,119 +–199306_rmscc1040_MAT_MAT1-1UREG_00454
MAT1-1-1core MAThit onlyDIAMOND, proteome70.3cov 99.5%9.2e-182503 bits854,098–855,328 +–199306_rmscc1040_MAT_MAT1-1UREG_00455
SLA2conserved flankhit onlyDIAMOND, proteome94.3cov 93.9%< 1e-1801,628 bits856,813–860,229 -–5501_rs_MAT_MAT1-2UREG_00456
COX13expected, not found–

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
MATCH476617:999,919–1,002,046MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
Ureesii1704.genome.fasta
Assembly
45 contigs · 22.3 Mb · N50 5.2 Mb
Genome SHA-256
0441695ed4de0bbc1aabfcf16e04bdcd88412aa56621df7ce15c95d1cd323056
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 33184, 'routing_taxid_rank': 'family', 'flags': ['identical_to_reference'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 33184', 'routed_by': 'family taxid 33184 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:06:47Z
Run time
48 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits