Umaydis521 Ustilago maydis 521

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_bLocus_0: undetermined Basidiomycota:bLocus, confidence high, CM003140:1688370-1693905

MATPredictFungiDBbE (core_MAT) CM003140:1690004-1691499 - identity 100.0bEbW (core_MAT) CM003140:1691754-1693905 + identity 100.0bWUMAG_00574 1679998-1685052 -: putative DNA/RNA helicase (DEAD/H box family II)UMAG_00574UMAG_00575 1685553-1688201 +: unspecified productUMAG_00575UMAG_00576 1688370-1689083 -: unspecified productUMAG_00576UMAG_12052 1690004-1691499 -: b mating type locus, bE1 alleleUMAG_12052UMAG_00578 1691754-1693905 +: b mating type locus, bW1 alleleUMAG_00578UMAG_00579 1694217-1696898 -: unspecified productUMAG_00579UMAG_10468 1697858-1698655 +: unspecified productUMAG_104681684 kb1686 kb1688 kb1690 kb1692 kb1694 kb1696 kb1698 kbCM003140
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
bEcore_MAT1690004-1691499 -annotatedUMAG_12052b mating type locus, bE1 alleleUMAG_12052 covers 100% of it on the same strand
bWcore_MAT1691754-1693905 +annotatedUMAG_00578b mating type locus, bW1 alleleUMAG_00578 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
UMAG_005761688370-1689083 -unspecified product

Basidiomycota_aLocus_1: undetermined Basidiomycota:aLocus, confidence high, CM003144:1023522-1028134

MATPredictFungiDBmfa1 (core_MAT) CM003144:1023522-1023644 - identity 100.0mfa1pra1 (core_MAT) CM003144:1025469-1026779 - identity 100.0pra1rba1 (flanking_variable) CM003144:1027492-1028134 - identity 100.0rba1UMAG_02380 1019879-1020886 +: unspecified productUMAG_02380UMAG_02381 1021211-1022857 -: unspecified productUMAG_02381UMAG_02382 MFA1 1023522-1023644 -: a1-specific pheromoneUMAG_02382 MFA1UMAG_02383 PRA1 1025469-1026779 -: a2-pheromone receptor Pra1UMAG_02383 PRA1UMAG_02384 1027492-1028134 -: a1-mating type protein Rba1UMAG_02384UMAG_10139 1028379-1029680 -: putative pantoate--beta-alanine ligaseUMAG_10139UMAG_10140 1030402-1031436 +: unspecified productUMAG_10140UMAG_02385 1032102-1033283 -: putative 3-deoxy-7-phosphoheptulonate synthaseUMAG_023851020 kb1022 kb1024 kb1026 kb1028 kb1030 kb1032 kbCM003144
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
mfa1core_MAT1023522-1023644 -annotatedUMAG_02382 MFA1a1-specific pheromoneUMAG_02382 covers 100% of it on the same strand
pra1core_MAT1025469-1026779 -annotatedUMAG_02383 PRA1a2-pheromone receptor Pra1UMAG_02383 covers 100% of it on the same strand
rba1flanking_variable1027492-1028134 -annotatedUMAG_02384a1-mating type protein Rba1UMAG_02384 covers 100% of it on the same strand