TstipitatusATCC10500 Talaromyces stipitatus ATCC 10500

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence medium, EQ962658:1029674-1044421

MATPredictFungiDBCOX13 (flanking_conserved) EQ962658:1029674-1030530 - identity 76.1COX13APN2 (flanking_conserved) EQ962658:1030636-1032833 + identity 90.9APN2MAT1-1-4 (core_MAT) EQ962658:1035072-1035512 - identity 23.81MAT1-1-4MAT1-1-1 (core_MAT) EQ962658:1036386-1037483 + identity 46.5MAT1-1-1SLA2 (flanking_conserved) EQ962658:1040599-1044421 - identity 88.2SLA2TSTA_100820 1022565-1026548 +: MFS sugar transporter, putativeTSTA_100820TSTA_100830 1025263-1027849 -: C6 transcription factor (Gal4), putativeTSTA_100830TSTA_100840 1029399-1030530 -: cytochrome c oxidase subunit VIa, putativeTSTA_100840TSTA_100850 1030636-1033025 +: DNA lyase Apn2TSTA_100850TSTA_100860 1034687-1035901 -: hypothetical proteinTSTA_100860TSTA_100870 1036386-1037483 +: Mating-type protein MAT-1, putativeTSTA_100870TSTA_100880 1040288-1044421 -: cytoskeleton assembly control protein Sla2, putativeTSTA_100880TSTA_100890 1044903-1048107 -: conserved hypothetical proteinTSTA_100890TSTA_100900 1048433-1049877 -: ankyrin repeat domain protein, putativeTSTA_1009001028 kb1032 kb1036 kb1040 kb1044 kb1048 kbEQ962658
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved1029674-1030530 -annotatedTSTA_100840cytochrome c oxidase subunit VIa, putativeTSTA_100840 covers 100% of it on the same strand
APN2flanking_conserved1030636-1032833 +annotatedTSTA_100850DNA lyase Apn2TSTA_100850 covers 100% of it on the same strand
MAT1-1-4core_MAT1035072-1035512 -annotatedTSTA_100860hypothetical proteinTSTA_100860 covers 100% of it on the same strand
MAT1-1-1core_MAT1036386-1037483 +annotatedTSTA_100870Mating-type protein MAT-1, putativeTSTA_100870 covers 100% of it on the same strand
SLA2flanking_conserved1040599-1044421 -annotatedTSTA_100880cytoskeleton assembly control protein Sla2, putativeTSTA_100880 covers 100% of it on the same strand

Ascomycota_MAT_1: MAT1-2 Ascomycota:MAT, confidence medium, EQ962662:154049-159997

MATPredictFungiDBAPN2 (flanking_conserved) EQ962662:154049-155248 + identity 70.8APN2MAT1-2-1 (core_MAT) EQ962662:157442-158533 - identity 54.8MAT1-2-1MAT1-2-4 (core_MAT) EQ962662:159079-159997 + identity 33.6MAT1-2-4TSTA_008490 148759-149722 +: hypothetical proteinTSTA_008490TSTA_008500 149958-150499 +: hypothetical proteinTSTA_008500TSTA_008510 151067-153259 +: conserved hypothetical proteinTSTA_008510TSTA_008520 154049-155248 +: conserved hypothetical proteinTSTA_008520TSTA_008530 157442-158680 -: mating type protein MAT1-2-1TSTA_008530TSTA_008540 159079-160752 +: mating locus protein, putativeTSTA_008540150 kb152 kb154 kb156 kb158 kb160 kb162 kb164 kbEQ962662
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
APN2flanking_conserved154049-155248 +annotatedTSTA_008520conserved hypothetical proteinTSTA_008520 covers 100% of it on the same strand
MAT1-2-1core_MAT157442-158533 -annotatedTSTA_008530mating type protein MAT1-2-1TSTA_008530 covers 100% of it on the same strand
MAT1-2-4core_MAT159079-159997 +annotatedTSTA_008540mating locus protein, putativeTSTA_008540 covers 100% of it on the same strand