TreeseiQM6a2017 Trichoderma reesei QM6a 2017

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, CP016234.1:3881347-3894174

MATPredictFungiDBSLA2 (flanking_conserved) CP016234.1:3881347-3884830 + identity 81.6SLA2COX13 (flanking_conserved) CP016234.1:3888365-3889110 - identity 65.9COX13APN2 (flanking_conserved) CP016234.1:3889614-3892018 + identity 86.4APN2MAT1-2-4 (core_MAT) CP016234.1:3891458-3891745 + identity 26.263MAT1-2-4MAT1-2-1 (core_MAT) CP016234.1:3893340-3894174 - identity 64.0MAT1-2-1TrQ_004963 3876482-3878364 +: mRNA splicing proteinTrQ_004963TrQ_004964 3878074-3879448 -: 40S ribosomal protein S9, variant 2TrQ_004964TrQ_004965 3879623-3880299 +: hypothetical proteinTrQ_004965TrQ_004966 3881086-3885763 +: hypothetical proteinTrQ_004966TrQ_004967 3885041-3887617 -: hypothetical proteinTrQ_004967TrQ_004969 3888238-3892711 +: hypothetical proteinTrQ_004969TrQ_004968 3888365-3889110 -: hypothetical proteinTrQ_004968TrQ_004970 3892652-3894404 -: hypothetical proteinTrQ_004970TrQ_004971 3895585-3896383 +: hypothetical proteinTrQ_004971TrQ_004972 3896840-3897114 +: hypothetical proteinTrQ_004972TrQ_004973 3897316-3899222 -: hypothetical proteinTrQ_004973TrQ_004974 3899135-3900782 +: hypothetical proteinTrQ_0049743878 kb3880 kb3882 kb3884 kb3886 kb3888 kb3890 kb3892 kb3894 kb3896 kb3898 kbCP016234.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved3881347-3884830 +annotatedTrQ_004966hypothetical proteinTrQ_004966 covers 100% of it on the same strand
COX13flanking_conserved3888365-3889110 -partialTrQ_004969hypothetical proteinTrQ_004969 overlaps 100% but on the opposite strand
APN2flanking_conserved3889614-3892018 +annotatedTrQ_004969hypothetical proteinTrQ_004969 covers 100% of it on the same strand
MAT1-2-4core_MAT3891458-3891745 +annotatedTrQ_004969hypothetical proteinTrQ_004969 covers 100% of it on the same strand
MAT1-2-1core_MAT3893340-3894174 -annotatedTrQ_004970hypothetical proteinTrQ_004970 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
TrQ_0049673885041-3887617 -hypothetical protein