TmentagrophytesTIMM2789 Trichophyton mentagrophytes TIMM 2789

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, BFBS01016511:55408-67922

MATPredictFungiDBCIMG_00407 (core_MAT) BFBS01016511:55408-56046 - identity 25.352CIMG_00407MAT1-2-4 (core_MAT) BFBS01016511:55483-55857 - identity 25.397MAT1-2-4MAT1-2-1 (core_MAT) BFBS01016511:56728-57963 + identity 60.0MAT1-2-1MAT1-1-4 (core_MAT) BFBS01016511:58497-59753 - identity 41.6MAT1-1-4APN2 (flanking_conserved) BFBS01016511:60527-62362 - identity 76.6APN2COX13 (flanking_conserved) BFBS01016511:62881-63536 + identity 68.9COX13SLA2 (flanking_conserved) BFBS01016511:63961-67922 - identity 88.1SLA2TMEN_9212 49895-51793 +: d-lactate dehydrogenaseTMEN_9212TMEN_9213 52299-53566 +: 40S ribosomal protein S4TMEN_9213TMEN_9214 55474-56220 -: unspecified productTMEN_9214TMEN_9215 56728-57963 +: MAT+ sexual cell fertilization-promoting factorTMEN_9215TMEN_9216 58497-59753 -: unspecified productTMEN_9216TMEN_9217 60527-62362 -: DNA-(apurinic or apyrimidinic site) lyaseTMEN_9217TMEN_9218 62881-63536 +: cytochrome c oxidase subunit 6ATMEN_9218TMEN_9219 63961-67922 -: endocytosis proteinTMEN_9219TMEN_9220 68455-71160 -: PH domain-containing proteinTMEN_9220TMEN_9221 71596-72191 -: hemerythrin-like proteinTMEN_9221TMEN_9222 72868-73937 -: unspecified productTMEN_922252 kb54 kb56 kb58 kb60 kb62 kb64 kb66 kb68 kb70 kb72 kbBFBS01016511
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
CIMG_00407core_MAT55408-56046 -annotatedTMEN_9214unspecified productTMEN_9214 covers 90% of it on the same strand
MAT1-2-4core_MAT55483-55857 -annotatedTMEN_9214unspecified productTMEN_9214 covers 100% of it on the same strand
MAT1-2-1core_MAT56728-57963 +annotatedTMEN_9215MAT+ sexual cell fertilization-promoting factorTMEN_9215 covers 100% of it on the same strand
MAT1-1-4core_MAT58497-59753 -annotatedTMEN_9216unspecified productTMEN_9216 covers 100% of it on the same strand
APN2flanking_conserved60527-62362 -annotatedTMEN_9217DNA-(apurinic or apyrimidinic site) lyaseTMEN_9217 covers 100% of it on the same strand
COX13flanking_conserved62881-63536 +annotatedTMEN_9218cytochrome c oxidase subunit 6ATMEN_9218 covers 100% of it on the same strand
SLA2flanking_conserved63961-67922 -annotatedTMEN_9219endocytosis proteinTMEN_9219 covers 100% of it on the same strand