Sschenckii1099-18 Sporothrix schenckii 1099-18

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, AXCR01000001:1660765-1705874

MATPredictFungiDBSLA2 (flanking_conserved) AXCR01000001:1660765-1664229 + identity 93.9SLA2MAT1-1-1 (core_MAT) AXCR01000001:1666165-1669269 - identity 44.8MAT1-1-1MAT1-1-2 (core_MAT) AXCR01000001:1669869-1671193 - identity 34.8MAT1-1-2MAT1-1-3 (core_MAT) AXCR01000001:1671585-1671924 + identity 61.0MAT1-1-3MAT1-2-1 (core_MAT) AXCR01000001:1672001-1672278 + identity 41.1MAT1-2-1COX13 (flanking_conserved) AXCR01000001:1697144-1698020 - identity 72.6COX13APN2 (flanking_conserved) AXCR01000001:1702952-1705874 - identity 61.5APN2SPSK_05815 1654960-1659924 -: DNA polymerase zeta subunitSPSK_05815SPSK_05860 1660765-1664229 +: hypothetical proteinSPSK_05860SPSK_05897 1666165-1669269 -: hypothetical proteinSPSK_05897SPSK_06310 1669869-1671193 -: hypothetical proteinSPSK_06310SPSK_06759 1671585-1671924 +: hypothetical proteinSPSK_06759SPSK_06711 1674915-1675365 +: hypothetical proteinSPSK_06711SPSK_05817 1677660-1682384 -: hypothetical proteinSPSK_05817SPSK_05913 1693223-1696175 +: hypothetical proteinSPSK_05913SPSK_06524 1697144-1698020 -: cytochrome c oxidase subunit 6aSPSK_06524SPSK_06719 1699292-1699729 -: hypothetical proteinSPSK_06719SPSK_06094 1700331-1702241 +: hypothetical proteinSPSK_06094SPSK_05918 1702952-1705874 -: AP endonuclease 2SPSK_05918SPSK_05878 1707657-1710907 -: C6 transcription factorSPSK_058781656 kb1664 kb1672 kb1680 kb1688 kb1696 kb1704 kbAXCR01000001
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved1660765-1664229 +annotatedSPSK_05860hypothetical proteinSPSK_05860 covers 100% of it on the same strand
MAT1-1-1core_MAT1666165-1669269 -annotatedSPSK_05897hypothetical proteinSPSK_05897 covers 100% of it on the same strand
MAT1-1-2core_MAT1669869-1671193 -annotatedSPSK_06310hypothetical proteinSPSK_06310 covers 100% of it on the same strand
MAT1-1-3core_MAT1671585-1671924 +annotatedSPSK_06759hypothetical proteinSPSK_06759 covers 100% of it on the same strand
MAT1-2-1core_MAT1672001-1672278 +novel—no FungiDB gene overlaps this MATPredict gene
COX13flanking_conserved1697144-1698020 -annotatedSPSK_06524cytochrome c oxidase subunit 6aSPSK_06524 covers 100% of it on the same strand
APN2flanking_conserved1702952-1705874 -annotatedSPSK_05918AP endonuclease 2SPSK_05918 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
SPSK_067111674915-1675365 +hypothetical protein
SPSK_058171677660-1682384 -hypothetical protein
SPSK_059131693223-1696175 +hypothetical protein
SPSK_067191699292-1699729 -hypothetical protein
SPSK_060941700331-1702241 +hypothetical protein