SreilianumSRZ2 Sporisorium reilianum SRZ2

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_bLocus_0: undetermined Basidiomycota:bLocus, confidence high, FQ311430:1664849-1672806

MATPredictFungiDBbW (core_MAT) FQ311430:1664849-1667008 - identity 79.2bWbE (core_MAT) FQ311430:1667242-1668708 + identity 81.8bEsr11859 1658347-1660266 +: conserved hypothetical proteinsr11859sr11858 1660414-1661668 -: conserved hypothetical proteinsr11858sr11857 1661942-1664635 +: related to n-terminal acetyltransferase 1sr11857sr11856 bW2 1664849-1667008 -: homeodomain transcription factor bW2sr11856 bW2sr11855 bE2 1667242-1668708 +: homeodomain transcription factor bE2sr11855 bE2sr11854 1672096-1672806 +: related to nuclear regulatorsr11854sr11853 1672957-1675605 -: related to IES1-Subunit 1 of the INO80 chromatin remodeling complexsr11853sr11852 1675957-1681056 +: probable DNA/RNA helicase (DEAD/H box family II)sr118521660 kb1662 kb1664 kb1666 kb1668 kb1670 kb1672 kb1674 kb1676 kbFQ311430
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
bWcore_MAT1664849-1667008 -annotatedsr11856 bW2homeodomain transcription factor bW2sr11856 covers 100% of it on the same strand
bEcore_MAT1667242-1668708 +annotatedsr11855 bE2homeodomain transcription factor bE2sr11855 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
sr118541672096-1672806 +related to nuclear regulator

Basidiomycota_aLocus_1: undetermined Basidiomycota:aLocus, confidence high, FQ311442:760387-769855

MATPredictFungiDBrba1 (flanking_variable) FQ311442:760387-761076 + identity 84.1rba1mfa1 (core_MAT) FQ311442:764024-764140 - identity 76.9mfa1pra1 (core_MAT) FQ311442:767380-768589 + identity 81.5pra1sr13583 755524-756705 +: probable phospho-2-dehydro-3-deoxyheptonate aldolasesr13583sr13582 757153-758222 -: conserved hypothetical proteinsr13582sr13581 758892-760181 +: probable pantoate--beta-alanine ligasesr13581sr13580 Rba2 760387-761076 +: Rba2 proteinsr13580 Rba2sr16906 761527-762288 +: hypothetical proteinsr16906sr16905 762631-763497 +: hypothetical proteinsr16905sr16904 mfa2.1 764024-764140 -: Mating factor a2.1sr16904 mfa2.1sr16903 Rga2 764744-765324 -: Rga2 proteinsr16903 Rga2sr16902 Lga2 766002-767012 +: Lga2 proteinsr16902 Lga2sr16901 Pra2 767380-768589 +: Pheromone receptor a2sr16901 Pra2sr16900 mfa2.3 769733-769855 +: mating factor a2.3sr16900 mfa2.3sr13587 771266-772918 +: conserved hypothetical proteinsr13587sr13588 773067-774005 -: conserved hypothetical proteinsr13588sr13589 774385-775084 +: related to subunit of the Arp2/3 complexsr13589756 kb758 kb760 kb762 kb764 kb766 kb768 kb770 kb772 kb774 kbFQ311442
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
rba1flanking_variable760387-761076 +annotatedsr13580 Rba2Rba2 proteinsr13580 covers 100% of it on the same strand
mfa1core_MAT764024-764140 -annotatedsr16904 mfa2.1Mating factor a2.1sr16904 covers 100% of it on the same strand
pra1core_MAT767380-768589 +annotatedsr16901 Pra2Pheromone receptor a2sr16901 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
sr16906761527-762288 +hypothetical protein
sr16905762631-763497 +hypothetical protein
sr16903 Rga2764744-765324 -Rga2 protein
sr16902 Lga2766002-767012 +Lga2 protein
sr16900 mfa2.3769733-769855 +mating factor a2.3