SparadoxusCBS432 Saccharomyces paradoxus CBS432 Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
Ascomycota_MATsc_0: MATalpha Ascomycota:MATsc, confidence medium, CP020244:42785-44210 MATPredict FungiDB MATA2 (core_MAT) CP020244:42785-43417 - identity 100.0 MATA2 MATALPHA2 (core_MAT) CP020244:42785-43417 - identity 100.0 MATALPHA2 MATALPHA1 (core_MAT) CP020244:43683-44210 + identity 90.3 MATALPHA1 SPAR_C00040 42785-43417 -: Hmlalpha2 SPAR_C00040 SPAR_C00050 43683-44210 +: Hmlalpha1 SPAR_C00050 SPAR_C00060 46336-47418 -: Cha1 SPAR_C00060 SPAR_C00070 47834-49114 +: Vac17 SPAR_C00070 38 kb 39 kb 40 kb 41 kb 42 kb 43 kb 44 kb 45 kb 46 kb 47 kb 48 kb 49 kb CP020244 MATPredict gene Role Coordinates Verdict FungiDB gene FungiDB product Why MATA2 core_MAT 42785-43417 - annotated SPAR_C00040 Hmlalpha2 SPAR_C00040 covers 100% of it on the same strand MATALPHA2 core_MAT 42785-43417 - annotated SPAR_C00040 Hmlalpha2 SPAR_C00040 covers 100% of it on the same strand MATALPHA1 core_MAT 43683-44210 + annotated SPAR_C00050 Hmlalpha1 SPAR_C00050 covers 100% of it on the same strand
Ascomycota_MATsc_1: MATalpha Ascomycota:MATsc, confidence medium, CP020244:227069-228147 MATPredict FungiDB MATA2 (core_MAT) CP020244:227069-227701 - identity 100.0 MATA2 MATALPHA2 (core_MAT) CP020244:227069-227701 - identity 100.0 MATALPHA2 MATALPHA1 (core_MAT) CP020244:227803-228147 + identity 85.0 MATALPHA1 SPAR_C00920 221941-224712 -: Pho87 SPAR_C00920 SPAR_C00930 225140-226966 -: Bud5 SPAR_C00930 SPAR_C00940 227069-227701 -: Matalpha2 SPAR_C00940 SPAR_C00950 227803-228147 +: Matalpha1 SPAR_C00950 SPAR_C00960 228673-232908 -: Taf2 SPAR_C00960 223 kb 224 kb 225 kb 226 kb 227 kb 228 kb 229 kb 230 kb 231 kb 232 kb 233 kb CP020244 MATPredict gene Role Coordinates Verdict FungiDB gene FungiDB product Why MATA2 core_MAT 227069-227701 - annotated SPAR_C00940 Matalpha2 SPAR_C00940 covers 100% of it on the same strand MATALPHA2 core_MAT 227069-227701 - annotated SPAR_C00940 Matalpha2 SPAR_C00940 covers 100% of it on the same strand MATALPHA1 core_MAT 227803-228147 + annotated SPAR_C00950 Matalpha1 SPAR_C00950 covers 100% of it on the same strand
Ascomycota_MATsc_2: MATalpha Ascomycota:MATsc, confidence medium, CP020244:321159-322477 MATPredict FungiDB MATA2 (core_MAT) CP020244:321159-321518 - identity 100.0 MATA2 MATALPHA2 (core_MAT) CP020244:321159-321518 - identity 100.0 MATALPHA2 MATALPHA1 (core_MAT) CP020244:321813-322477 + identity 97.5 MATALPHA1 SPAR_C01390 315882-316970 -: Oca4 SPAR_C01390 SPAR_C01400 321159-321518 -: Hmra2 SPAR_C01400 SPAR_C01410 321813-322477 +: Hmra1 SPAR_C01410 SPAR_Ctrna10T 323878-323950 +: tRNA-Thr SPAR_Ctrna10T SPAR_C01420 326852-328408 -: Git1 SPAR_C01420 317 kb 318 kb 319 kb 320 kb 321 kb 322 kb 323 kb 324 kb 325 kb 326 kb 327 kb CP020244 MATPredict gene Role Coordinates Verdict FungiDB gene FungiDB product Why MATA2 core_MAT 321159-321518 - annotated SPAR_C01400 Hmra2 SPAR_C01400 covers 100% of it on the same strand MATALPHA2 core_MAT 321159-321518 - annotated SPAR_C01400 Hmra2 SPAR_C01400 covers 100% of it on the same strand MATALPHA1 core_MAT 321813-322477 + annotated SPAR_C01410 Hmra1 SPAR_C01410 covers 100% of it on the same strand