MATPredict · mating-type report

SludwigiiUTAD17

MAT locus above the FungiDB annotation (gene by gene)

Ascomycota

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:02 UTC by MATPredict 0.8.1

Result

Mating type

MATamedium confidence

Called loci 1

MATa MATsc family · Ascomycota

medium confidence
Gene order of the MATa locus on UFAJ01000036MATa locus: genes from left to right on UFAJ01000036, 19,669 to 25,533: MATA2 (core MAT gene, minus strand); MATA1 (core MAT gene, plus strand); sla2 (conserved flank, minus strand).20 kb21 kb22 kb23 kb24 kb25 kbcontig endcalled locusMATA2: core MAT gene, 19,687–19,944 (-), identity 30.233%, search hit onlyMATA2MATA1: core MAT gene, 21,890–22,149 (+), identity 43.1%, gene modelMATA1sla2: conserved flank, 22,336–25,533 (-), identity 48.3%, search hit onlysla2
Gene order on UFAJ01000036. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on UFAJ01000036, 19,369 to 25,738SCODWIG_00450 22,336-25,533 (-): related to cytoskeleton assembly control protein Sla2SCODWIG_00450
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • gene model
  • search hit only
  • The same genes also match: Ascomycota:MTL.
Location
UFAJ01000036:19,669–25,533 · 5.9 kb
Cross-lineage class
MAT1-2
Own genes
UFAJ01000036:19,687–25,533 · 5.8 kb · the span runs 18 bp beyond these genes
Supported span
UFAJ01000036:19,687–25,533 · 5.8 kb · 18 bp of the reported span rests only on hits below 33 bits
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
2 of 3 gene hits
Nearest contig end
205 bp
Region (samtools)
UFAJ01000036:19669-25533
Idiomorph scores
  • MATa 48.1

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MATA2core MAThit onlytblastn30.2cov 32.0%6.3e-0645 bits19,687–19,944 -–28985_nrrl-y-1140_MATsc_MATanone
MATA1core MATgene modelexonerate43.1cov 46.0%7.2e-0848 bits21,890–22,149 +24932_s288c_MATsc_HMRanone
sla2conserved flankhit onlyDIAMOND, proteome48.3cov 56.2%9.4e-95308 bits22,336–25,533 -–28985_nrrl-y-1140_MATsc_MATaSCODWIG_00450
cha1not searchable: no reference protein in the database–

Withheld candidate loci 65

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (60); too few of the family's genes found (5).

Show the 65 withheld loci

Withheld loci (65)

familylocationidiomorph genesmodelledreason
MTLUFAJ01000036:19,669–25,533AMTLA1, MTLA21fewer than 2 genes could be modelled
MATscUFAJ01001252:477–572MATalphaMATALPHA10fewer than 2 genes could be modelled
MATscUFAJ01000443:7,154–7,408MATalphaMATALPHA10fewer than 2 genes could be modelled
MATscUFAJ01000679:3,365–3,514MATalphaMATALPHA10fewer than 2 genes could be modelled
MATscUFAJ01000273:9,560–9,892undeterminedMATALPHA2, MATA20fewer than 2 genes could be modelled
MATscUFAJ01001349:744–998undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscUFAJ01001244:1,146–1,313undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscUFAJ01000418:3,006–3,197undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscUFAJ01000898:2,618–2,815MATaMATA10fewer than 2 genes could be modelled
MTLUFAJ01000898:2,618–2,815AMTLA10fewer than 2 genes could be modelled
MATscUFAJ01000096:16,687–16,929MATaMATA10fewer than 2 genes could be modelled
MTLUFAJ01000096:16,687–16,929AMTLA10fewer than 2 genes could be modelled
MATscUFAJ01000334:8,224–8,466MATaMATA10fewer than 2 genes could be modelled
MATscUFAJ01000345:3,634–3,759MATaMATA10fewer than 2 genes could be modelled
MATscUFAJ01000195:520–633undeterminedMATA20fewer than 2 genes could be modelled
MATscUFAJ01000560:6,511–6,729undeterminedMATA20fewer than 2 genes could be modelled
MATscUFAJ01000292:1,593–1,718MATalphaMATALPHA10fewer than 2 genes could be modelled
MATscUFAJ01000012:8,978–9,163MATalphaMATALPHA10fewer than 2 genes could be modelled
MATscUFAJ01000426:3,890–4,012undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscUFAJ01000587:6,346–6,483undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscUFAJ01000996:391–516undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscUFAJ01000016:18,200–18,337undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscUFAJ01001165:1,707–1,838MATaMATA10fewer than 2 genes could be modelled
MATscUFAJ01000032:12,045–12,266undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscUFAJ01000408:46–273undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscUFAJ01000158:4,079–4,216MATalphaMATALPHA10fewer than 2 genes could be modelled
MATscUFAJ01000140:6,686–6,775undeterminedMATALPHA20fewer than 2 genes could be modelled
MTLUFAJ01000098:4,539–4,676alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000932:225–326alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000207:8,515–8,658alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01001093:1,114–1,311alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000042:14,480–14,653AMTLA10fewer than 2 genes could be modelled
MTLUFAJ01000260:2,517–2,756AMTLA10fewer than 2 genes could be modelled
MTLUFAJ01000607:4,036–4,155AMTLA10fewer than 2 genes could be modelled
MTLUFAJ01001088:2,221–2,433AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000858:3,150–3,251AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000215:7,874–7,978AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000131:6,661–6,756AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000296:4,080–4,193AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000222:191–6,386AMTLA1, MTLA20fewer than 2 genes could be modelled
MTLUFAJ01001150:1,475–1,777alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000003:12,306–12,496alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000509:2,202–2,300alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000004:16,605–16,703alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000152:10,616–10,789alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000880:2,046–2,168alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000112:16,345–16,443AMTLA10fewer than 2 genes could be modelled
MTLUFAJ01000924:2,967–3,146AMTLA10fewer than 2 genes could be modelled
MTLUFAJ01000353:1,005–1,154alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000352:8,212–8,313alphaMTLalpha10fewer than 2 genes could be modelled
MTLUFAJ01000065:18,262–18,612AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000648:4,962–5,060AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000269:5,311–5,451AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000341:6,994–7,092AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000360:6,275–6,448AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000867:3,227–3,397AMTLA20fewer than 2 genes could be modelled
MTLUFAJ01000181:4,951–5,136AMTLA10fewer than 2 genes could be modelled
MTLUFAJ01000298:5,984–6,136AMTLA10fewer than 2 genes could be modelled
MTLUFAJ01000113:14,449–14,658AMTLA10fewer than 2 genes could be modelled
MTLUFAJ01000791:641–730AMTLA10fewer than 2 genes could be modelled
MTLUFAJ01000011:27,982–31,236undeterminedPIK11too few of the family's genes found
MTLUFAJ01000369:3,993–9,818undeterminedPIK11too few of the family's genes found
MTLUFAJ01000545:279–4,643undeterminedPAP1, OBP12too few of the family's genes found
MTLUFAJ01001022:229–3,138undeterminedOBP11too few of the family's genes found
MTLUFAJ01001239:252–1,622undeterminedOBP11too few of the family's genes found

Provenance

Genome file
SludwigiiUTAD17.genome.fasta
Assembly
1,360 contigs · 10.8 Mb · N50 11.0 kb
Genome SHA-256
8d903a4c2f3108426f24b4b6e39a7ab9c1c42ff0729b0e9d8881fbb13eb321f9
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 34365, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 34365', 'routed_by': 'family taxid 34365 (phylum_fallback)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:02:34Z
Run time
21 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits