ScommuneH4-8 Schizophyllum commune H4-8
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_Aalpha_0: undetermined Basidiomycota:Aalpha, confidence high, MU410293:1244589-1270175
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| Z | core_MAT | 1244589-1246544 - | annotated | SCHCODRAFT_02489147 | Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:D8PSE2] | SCHCODRAFT_02489147 covers 100% of it on the same strand |
| Y | core_MAT | 1268056-1270175 - | annotated | SCHCODRAFT_02565082 | Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:D8PSD7] | SCHCODRAFT_02565082 covers 100% of it on the same strand |
| HD1 | core_MAT | 1244589-1246544 - | annotated | SCHCODRAFT_02489147 | Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:D8PSE2] | SCHCODRAFT_02489147 covers 100% of it on the same strand |
| HD2 | core_MAT | 1247393-1249973 - | annotated | SCHCODRAFT_02610278 | Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:D8PSE1] | SCHCODRAFT_02610278 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| SCHCODRAFT_02488787 | 1250283-1252277 + | Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:D8PSE0] |
| SCHCODRAFT_02684088 | 1253363-1255767 + | unspecified product |
| SCHCODRAFT_02610293 | 1265810-1267737 + | unspecified product |
Basidiomycota_Aalpha_1: undetermined Basidiomycota:Aalpha, confidence high, MU410293:1817709-1827456
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| Z | core_MAT | 1821007-1824096 - | annotated | SCHCODRAFT_02696654 | mating-type protein A-alpha Z4 | SCHCODRAFT_02696654 covers 100% of it on the same strand |
| Y | core_MAT | 1824368-1827456 + | annotated | SCHCODRAFT_02596714 | mating-type protein A-alpha Y4 | SCHCODRAFT_02596714 covers 100% of it on the same strand |
| MIP1 | flanking_conserved | 1817709-1820194 + | annotated | SCHCODRAFT_02684301 | mitochondrial intermediate peptidase mitochondrial precursor | SCHCODRAFT_02684301 covers 100% of it on the same strand |
| HD1 | core_MAT | 1821007-1824096 - | annotated | SCHCODRAFT_02696654 | mating-type protein A-alpha Z4 | SCHCODRAFT_02696654 covers 100% of it on the same strand |
| HD2 | core_MAT | 1824368-1827456 + | annotated | SCHCODRAFT_02596714 | mating-type protein A-alpha Y4 | SCHCODRAFT_02596714 covers 100% of it on the same strand |
Basidiomycota_Bbeta_2: undetermined Basidiomycota:Bbeta, confidence high, MU410302:190182-273658
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| bbp2-2 | core_MAT | 216536-216733 + | annotated | SCHCODRAFT_0251504 bbp2-2 | peptide mating pheromone precursor Bbp2-2 | SCHCODRAFT_0251504 covers 100% of it on the same strand |
| bbr2 | core_MAT | 218133-220277 - | annotated | SCHCODRAFT_01238578 bbr2 | pheromone B beta 2 receptor | SCHCODRAFT_01238578 covers 100% of it on the same strand |
| bbp2-1 | core_MAT | 221326-221638 - | annotated | SCHCODRAFT_083222 bbp2-1 | peptide mating pheromone precursor Bbp2-1 | SCHCODRAFT_083222 covers 100% of it on the same strand |
| bbp2_a | core_MAT | 224353-224604 - | annotated | SCHCODRAFT_0251507 bbp2 | pheromone | SCHCODRAFT_0251507 covers 100% of it on the same strand |
| bbp2_b | core_MAT | 227442-227732 + | annotated | SCHCODRAFT_02514483 bbp2 | peptide mating pheromone precursor Bbp2-7 | SCHCODRAFT_02514483 covers 100% of it on the same strand |
| bbp2-5 | core_MAT | 230121-230399 + | annotated | SCHCODRAFT_01104024 bbp2-5 | peptide mating pheromone precursor Bbp2-5 | SCHCODRAFT_01104024 covers 100% of it on the same strand |
| bbp2-8 | core_MAT | 232093-232374 - | annotated | SCHCODRAFT_017250 bbp2-8 | lipopeptide mating pheromone precursor Bbp2-8 | SCHCODRAFT_017250 covers 100% of it on the same strand |
| bbp2-6 | core_MAT | 233524-233781 + | annotated | SCHCODRAFT_060621 bbp2-6 | lipopeptide mating pheromone precursor Bbp2-6 | SCHCODRAFT_060621 covers 100% of it on the same strand |
| bap3-3 | core_MAT | 241497-241688 - | annotated | SCHCODRAFT_060520 bap3-3 | lipopeptide mating pheromone precursor Bap3(3) | SCHCODRAFT_060520 covers 100% of it on the same strand |
| bap3-1 | core_MAT | 245410-245586 - | annotated | SCHCODRAFT_060117 bap3-1 | lipopeptide mating pheromone precursor bap3-1 | SCHCODRAFT_060117 covers 100% of it on the same strand |
| bar3 | core_MAT | 246348-248430 + | annotated | SCHCODRAFT_01034973 bar3 | pheromone B alpha 3 receptor | SCHCODRAFT_01034973 covers 100% of it on the same strand |
| caax_precursor | core_MAT | 216536-216733 + | annotated | SCHCODRAFT_0251504 bbp2-2 | peptide mating pheromone precursor Bbp2-2 | SCHCODRAFT_0251504 covers 100% of it on the same strand |
| fungal_mating_type_pheromone | core_MAT | 224356-224532 - | annotated | SCHCODRAFT_0251507 bbp2 | pheromone | SCHCODRAFT_0251507 covers 100% of it on the same strand |
| pheromone_receptor | core_MAT | 246348-248430 + | annotated | SCHCODRAFT_01034973 bar3 | pheromone B alpha 3 receptor | SCHCODRAFT_01034973 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| SCHCODRAFT_01192520 brl1 | 189849-192799 - | B pheromone receptor-like protein 1 |
| SCHCODRAFT_02515303 | 193555-194462 - | Expressed protein [Source:UniProtKB/TrEMBL;Acc:D8QF27] |
| SCHCODRAFT_02066065 | 197198-198612 - | unspecified product |
| SCHCODRAFT_02638182 | 199600-200278 - | unspecified product |
| SCHCODRAFT_02692194 | 200379-202595 + | MYND-type domain-containing protein [Source:UniProtKB/TrEMBL;Acc:D8QF28] |
| SCHCODRAFT_01238579 | 217559-218045 - | unspecified product |
| SCHCODRAFT_02671487 | 225607-225777 + | Mating pheromone bbp2-4 [Source:UniProtKB/TrEMBL;Acc:D8QF34] |
| SCHCODRAFT_02066261 | 225834-226414 + | unspecified product |
| SCHCODRAFT_02769070 | 228629-228748 - | Peptide mating pheromone bbp2-3 [Source:UniProtKB/TrEMBL;Acc:D8QF37] |
| SCHCODRAFT_01160054 | 234286-234495 + | unspecified product |
| SCHCODRAFT_01238661 | 235612-236639 + | unspecified product |
| SCHCODRAFT_02588730 | 239257-240151 + | unspecified product |
| SCHCODRAFT_0270009 | 240602-240766 - | Pheromone-like protein [Source:UniProtKB/TrEMBL;Acc:D8QF43] |
| SCHCODRAFT_0270001 | 242710-243055 + | unspecified product |
| SCHCODRAFT_02638233 | 249134-251627 + | Zn-dependent exopeptidase |
| SCHCODRAFT_02638241 | 252548-254995 + | unspecified product |
| SCHCODRAFT_01216023 | 255156-257096 + | unspecified product |
| SCHCODRAFT_02638244 | 256903-258163 + | unspecified product |
| SCHCODRAFT_01192535 | 258203-262361 - | unspecified product |
| SCHCODRAFT_02066417 | 262495-263542 - | unspecified product |
| SCHCODRAFT_02638251 | 264215-266242 - | unspecified product |
| SCHCODRAFT_02638258 | 267878-270838 + | unspecified product |
| SCHCODRAFT_0258344 brl3 | 271890-273658 + | B pheromone receptor-like protein 1 |