RmelleaRicmel1 Rickenella mellea Ricmel1

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_HD_0: undetermined Basidiomycota:HD, confidence high, ML170157:65039-71749

MATPredictFungiDBMIP1 (flanking_conserved) ML170157:65039-67551 + identity 72.7MIP1HD1 (core_MAT) ML170157:67711-69936 - identity 35.4HD1HD2 (core_MAT) ML170157:70098-71749 + identity 28.9HD2BD410DRAFT_861433 59806-60211 +: unspecified productBD410DRAFT_861433BD410DRAFT_737503 64994-67631 +: mitochondrial intermediate peptidaseBD410DRAFT_737503BD410DRAFT_780788 67558-70004 -: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QKZ7]BD410DRAFT_780788BD410DRAFT_834430 70098-71749 +: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QKX4]BD410DRAFT_834430BD410DRAFT_824096 72086-74456 +: SET domain-containing proteinBD410DRAFT_824096BD410DRAFT_711521 74602-77820 -: Oligoxyloglucan reducing end-specific cellobiohydrolaseBD410DRAFT_71152162 kb64 kb66 kb68 kb70 kb72 kb74 kb76 kbML170157
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MIP1flanking_conserved65039-67551 +annotatedBD410DRAFT_737503mitochondrial intermediate peptidaseBD410DRAFT_737503 covers 100% of it on the same strand
HD1core_MAT67711-69936 -annotatedBD410DRAFT_780788Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QKZ7]BD410DRAFT_780788 covers 100% of it on the same strand
HD2core_MAT70098-71749 +annotatedBD410DRAFT_834430Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QKX4]BD410DRAFT_834430 covers 100% of it on the same strand

Basidiomycota_HD_1: undetermined Basidiomycota:HD, confidence high, ML170158:826019-838481

MATPredictFungiDBHD2 (core_MAT) ML170158:826019-828339 - identity 33.14HD2HD1 (core_MAT) ML170158:826558-828870 - identity 20.9HD1beta_fg (flanking_conserved) ML170158:835714-838481 - identity 42.5beta_fgBD410DRAFT_781955 821020-824352 +: Conserved oligomeric Golgi complex subunit 1 [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QLS7]BD410DRAFT_781955BD410DRAFT_894130 823984-826220 -: RNI-like proteinBD410DRAFT_894130BD410DRAFT_894131 826380-828870 -: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QK29]BD410DRAFT_894131BD410DRAFT_781957 828917-830925 +: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QKS8]BD410DRAFT_781957BD410DRAFT_835266 831768-835129 +: nucleotide-diphospho-sugar transferaseBD410DRAFT_835266BD410DRAFT_835267 835714-838481 -: DUF6534 domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QK22]BD410DRAFT_835267BD410DRAFT_824773 838925-840143 +: unspecified productBD410DRAFT_824773BD410DRAFT_739387 840124-842488 -: ABC1-domain-containing proteinBD410DRAFT_739387BD410DRAFT_894137 842488-844411 -: lipid binding proteinBD410DRAFT_894137822 kb824 kb826 kb828 kb830 kb832 kb834 kb836 kb838 kb840 kb842 kbML170158
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
HD2core_MAT826019-828339 -annotatedBD410DRAFT_894131Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QK29]BD410DRAFT_894131 covers 84% of it on the same strand
HD1core_MAT826558-828870 -annotatedBD410DRAFT_894131Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QK29]BD410DRAFT_894131 covers 100% of it on the same strand
beta_fgflanking_conserved835714-838481 -annotatedBD410DRAFT_835267DUF6534 domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QK22]BD410DRAFT_835267 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
BD410DRAFT_781957828917-830925 +Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QKS8]
BD410DRAFT_835266831768-835129 +nucleotide-diphospho-sugar transferase

Basidiomycota_PR_2: undetermined Basidiomycota:PR, confidence medium, ML170160:441810-480733

MATPredictFungiDBcaax_precursor (core_MAT) ML170160:465840-465971 + identity 0.0caax_precursorpheromone_receptor (core_MAT) ML170160:467182-468418 + identity 60.5pheromone_receptorBD410DRAFT_714887 435956-436922 -: glycoside hydrolase family 16 proteinBD410DRAFT_714887BD410DRAFT_714996 438120-440249 +: tubulin nucleotide-binding domain-like proteinBD410DRAFT_714996BD410DRAFT_741238 441670-443644 +: STE3-domain-containing proteinBD410DRAFT_741238BD410DRAFT_836029 443868-444742 -: unspecified productBD410DRAFT_836029BD410DRAFT_783028 444563-447000 +: CCR4-NOT transcription complex subunit 11 [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QJB8]BD410DRAFT_783028BD410DRAFT_741245 446691-450620 -: Pkinase-domain-containing proteinBD410DRAFT_741245BD410DRAFT_825383 451067-452210 -: PH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QI45]BD410DRAFT_825383BD410DRAFT_825384 453051-454344 -: PH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QIJ9]BD410DRAFT_825384BD410DRAFT_800026 455287-456388 -: PH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QGY0]BD410DRAFT_800026BD410DRAFT_763145 457275-457986 -: ribosomal protein S19/S15BD410DRAFT_763145BD410DRAFT_825386 458038-459463 +: unspecified productBD410DRAFT_825386BD410DRAFT_763147 461180-463358 +: STE3-domain-containing proteinBD410DRAFT_763147BD410DRAFT_800030 463744-465368 +: STE3-domain-containing proteinBD410DRAFT_800030BD410DRAFT_715216 467182-468418 +: fungal pheromone STE3G-protein-coupled receptorBD410DRAFT_715216BD410DRAFT_741253 469941-471858 +: STE3-domain-containing proteinBD410DRAFT_741253BD410DRAFT_783040 472365-473921 +: PCI domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QJ61]BD410DRAFT_783040BD410DRAFT_800034 474136-476913 -: HTH myb-type domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QI54]BD410DRAFT_800034BD410DRAFT_714990 477262-482666 -: Helicase ATP-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QIK8]BD410DRAFT_714990BD410DRAFT_714695 483946-487952 -: bifunctional P-450/NADPH-P450 reductaseBD410DRAFT_714695440 kb448 kb456 kb464 kb472 kb480 kbML170160
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
caax_precursorcore_MAT465840-465971 +novel—no FungiDB gene overlaps this MATPredict gene
pheromone_receptorcore_MAT467182-468418 +annotatedBD410DRAFT_715216fungal pheromone STE3G-protein-coupled receptorBD410DRAFT_715216 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
BD410DRAFT_741238441670-443644 +STE3-domain-containing protein
BD410DRAFT_836029443868-444742 -unspecified product
BD410DRAFT_783028444563-447000 +CCR4-NOT transcription complex subunit 11 [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QJB8]
BD410DRAFT_741245446691-450620 -Pkinase-domain-containing protein
BD410DRAFT_825383451067-452210 -PH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QI45]
BD410DRAFT_825384453051-454344 -PH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QIJ9]
BD410DRAFT_800026455287-456388 -PH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QGY0]
BD410DRAFT_763145457275-457986 -ribosomal protein S19/S15
BD410DRAFT_825386458038-459463 +unspecified product
BD410DRAFT_763147461180-463358 +STE3-domain-containing protein
BD410DRAFT_800030463744-465368 +STE3-domain-containing protein
BD410DRAFT_741253469941-471858 +STE3-domain-containing protein
BD410DRAFT_783040472365-473921 +PCI domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QJ61]
BD410DRAFT_800034474136-476913 -HTH myb-type domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QI54]
BD410DRAFT_714990477262-482666 -Helicase ATP-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QIK8]

Basidiomycota_PR_3: undetermined Basidiomycota:PR, confidence medium, ML170166:471767-492287

MATPredictFungiDBcaax_precursor (core_MAT) ML170166:471767-471982 - identity 0.0caax_precursorpheromone_receptor (core_MAT) ML170166:474425-475961 - identity 50.6pheromone_receptorBD410DRAFT_94919 468565-469957 -: Ubiquitin-like domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7QAF4]BD410DRAFT_94919BD410DRAFT_745226 474173-476340 -: STE3-domain-containing proteinBD410DRAFT_745226BD410DRAFT_896768 477661-478975 +: unspecified productBD410DRAFT_896768BD410DRAFT_786087 479937-482284 -: Ribokinase-like proteinBD410DRAFT_786087BD410DRAFT_896770 483896-486300 -: unspecified productBD410DRAFT_896770BD410DRAFT_896771 486349-488224 -: WD40 repeat-like proteinBD410DRAFT_896771BD410DRAFT_786090 488606-490875 +: glucose-6-phosphate isomeraseBD410DRAFT_786090BD410DRAFT_745234 491285-493005 -: ankyrinBD410DRAFT_745234BD410DRAFT_786092 493117-494771 -: ankyrinBD410DRAFT_786092BD410DRAFT_745243 497183-498815 -: unspecified productBD410DRAFT_745243468 kb472 kb476 kb480 kb484 kb488 kb492 kb496 kbML170166
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
caax_precursorcore_MAT471767-471982 -novel—no FungiDB gene overlaps this MATPredict gene
pheromone_receptorcore_MAT474425-475961 -annotatedBD410DRAFT_745226STE3-domain-containing proteinBD410DRAFT_745226 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
BD410DRAFT_896768477661-478975 +unspecified product
BD410DRAFT_786087479937-482284 -Ribokinase-like protein
BD410DRAFT_896770483896-486300 -unspecified product
BD410DRAFT_896771486349-488224 -WD40 repeat-like protein
BD410DRAFT_786090488606-490875 +glucose-6-phosphate isomerase
BD410DRAFT_745234491285-493005 -ankyrin

Basidiomycota_PR_4: undetermined Basidiomycota:PR, confidence medium, ML170195:29092-76120

MATPredictFungiDBcaax_precursor (core_MAT) ML170195:29092-29202 - identity 0.0caax_precursorpheromone_receptor (core_MAT) ML170195:60816-61933 - identity 53.7pheromone_receptorBD410DRAFT_432077 21903-24625 -: cytosine-purine permeaseBD410DRAFT_432077BD410DRAFT_727067 25000-25707 -: CBD9-like protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7PWP6]BD410DRAFT_727067BD410DRAFT_726943 25885-28070 -: unspecified productBD410DRAFT_726943BD410DRAFT_751961 29457-31454 -: STE3-domain-containing proteinBD410DRAFT_751961BD410DRAFT_726969 33069-36201 -: C2H2-type domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7PX06]BD410DRAFT_726969BD410DRAFT_841927 36344-38601 +: unspecified productBD410DRAFT_841927BD410DRAFT_805620 39060-40257 -: STE3-domain-containing proteinBD410DRAFT_805620BD410DRAFT_805621 43235-43841 -: unspecified productBD410DRAFT_805621BD410DRAFT_841929 43878-44419 -: fungal pheromone STE3G-protein-coupled receptorBD410DRAFT_841929BD410DRAFT_805622 44766-45846 +: unspecified productBD410DRAFT_805622BD410DRAFT_815881 46503-47880 -: STE3-domain-containing proteinBD410DRAFT_815881BD410DRAFT_432256 50283-52120 -: STE3-domain-containing proteinBD410DRAFT_432256BD410DRAFT_791947 54499-55917 +: DUF1275 domain protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7PX13]BD410DRAFT_791947BD410DRAFT_432266 55813-57588 -: STE3-domain-containing proteinBD410DRAFT_432266BD410DRAFT_791949 57937-58364 -: unspecified productBD410DRAFT_791949BD410DRAFT_432347 58625-59564 -: putative pheromone receptor STE3.2BD410DRAFT_432347BD410DRAFT_727008 60816-61933 -: fungal pheromone STE3G-protein-coupled receptorBD410DRAFT_727008BD410DRAFT_432526 67126-69503 +: alpha/beta-hydrolaseBD410DRAFT_432526BD410DRAFT_432547 69876-71529 -: STE3-domain-containing proteinBD410DRAFT_432547BD410DRAFT_876190 72684-74060 -: pheromone receptorBD410DRAFT_876190BD410DRAFT_773762 74583-76620 -: STE3-domain-containing proteinBD410DRAFT_773762BD410DRAFT_900101 76680-79165 +: MYND-type domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7PWR6]BD410DRAFT_900101BD410DRAFT_751998 79433-82466 +: MYND-type domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7PX20]BD410DRAFT_75199832 kb40 kb48 kb56 kb64 kb72 kb80 kbML170195
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
caax_precursorcore_MAT29092-29202 -novel—no FungiDB gene overlaps this MATPredict gene
pheromone_receptorcore_MAT60816-61933 -annotatedBD410DRAFT_727008fungal pheromone STE3G-protein-coupled receptorBD410DRAFT_727008 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
BD410DRAFT_75196129457-31454 -STE3-domain-containing protein
BD410DRAFT_72696933069-36201 -C2H2-type domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7PX06]
BD410DRAFT_84192736344-38601 +unspecified product
BD410DRAFT_80562039060-40257 -STE3-domain-containing protein
BD410DRAFT_80562143235-43841 -unspecified product
BD410DRAFT_84192943878-44419 -fungal pheromone STE3G-protein-coupled receptor
BD410DRAFT_80562244766-45846 +unspecified product
BD410DRAFT_81588146503-47880 -STE3-domain-containing protein
BD410DRAFT_43225650283-52120 -STE3-domain-containing protein
BD410DRAFT_79194754499-55917 +DUF1275 domain protein [Source:UniProtKB/TrEMBL;Acc:A0A4Y7PX13]
BD410DRAFT_43226655813-57588 -STE3-domain-containing protein
BD410DRAFT_79194957937-58364 -unspecified product
BD410DRAFT_43234758625-59564 -putative pheromone receptor STE3.2
BD410DRAFT_43252667126-69503 +alpha/beta-hydrolase
BD410DRAFT_43254769876-71529 -STE3-domain-containing protein
BD410DRAFT_87619072684-74060 -pheromone receptor
BD410DRAFT_77376274583-76620 -STE3-domain-containing protein