MATPredict · mating-type report

Ptriticina1-1BBBDRace1

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:48 UTC by MATPredict 0.8.1

Result

Mating type

undeterminedhigh confidence

Called loci 1

undetermined rustHD family · Basidiomycota

high confidence
Gene order of the undetermined locus on ADAS02000068.1undetermined locus: genes from left to right on ADAS02000068.1, 214,012 to 217,852: bW (core MAT gene, minus strand); bE (core MAT gene, plus strand).214 kb215 kb216 kb217 kb218 kb← 213.7 kb more to contig endcalled locusbW: core MAT gene, 214,012–215,954 (-), identity 100.0%, search hit onlybWbE: core MAT gene, 216,575–217,852 (+), identity 100.0%, search hit onlybE
Gene order on ADAS02000068.1. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on ADAS02000068.1, 213,712 to 218,152PTTG_27730 213,762-216,255 (-): hypothetical proteinPTTG_27730PTTG_03697 216,318-218,168 (+): hypothetical proteinPTTG_03697
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
Location
ADAS02000068.1:214,012–217,852 · 3.8 kb
Own genes
ADAS02000068.1:214,012–217,852 · 3.8 kb
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
2 of 2 gene hits
Nearest contig end
214.0 kb
Region (samtools)
ADAS02000068.1:214012-217852

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
bWcore MAThit onlyDIAMOND, proteome100.0cov 100.0%< 1e-180897 bits214,012–215,954 -–630390_1-1-bbbd-race-1_rustHD_b2PTTG_27730
bEcore MAThit onlyDIAMOND, proteome100.0cov 100.0%5.2e-247665 bits216,575–217,852 +–630390_1-1-bbbd-race-1_rustHD_b2PTTG_03697

Withheld candidate loci 53

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (53).

Show the 53 withheld loci

Withheld loci (53)

familylocationidiomorph genesmodelledreason
rustHDADAS02000068.1:17,899–18,057undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02002449.1:587–2,124undeterminedbE1fewer than 2 genes could be modelled
rustHDADAS02014062.1:559–717undeterminedbE1fewer than 2 genes could be modelled
rustHDADAS02014186.1:69–479undeterminedbW1fewer than 2 genes could be modelled
rustHDADAS02000011.1:1,166,374–1,166,484undeterminedbW0fewer than 2 genes could be modelled
rustHDADAS02000038.1:69,929–70,039undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000024.1:378,882–379,169undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000017.1:1,109,356–1,109,532undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02002023.1:2,528–2,671undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000062.1:183,314–183,595undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000056.1:598,483–598,635undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000238.1:13,604–13,741undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000099.1:261,141–261,350undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000022.1:633,197–633,385undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000032.1:857,193–857,318undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000039.1:702,791–702,928undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000009.1:374,692–374,814undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000009.1:898,421–898,564undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000009.1:1,313,929–1,314,204undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000028.1:141,087–141,233undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02004142.1:1,188–1,316undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000005.1:537,719–537,856undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000897.1:639–767undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000001.1:20,209–20,352undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000001.1:431,563–431,811undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000001.1:742,296–742,601undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02005016.1:435–578undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000016.1:563,749–563,877undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000049.1:258,431–258,592undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000080.1:464,576–464,887undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000501.1:2,653–2,808undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000078.1:161,671–161,862undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000104.1:30,796–30,885undeterminedbW0fewer than 2 genes could be modelled
rustHDADAS02000104.1:92,658–92,846undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000142.1:187,420–187,557undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000086.1:88,288–88,416undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000018.1:831,613–831,762undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000030.1:686,432–686,548undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02005553.1:898–1,020undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000147.1:74,172–74,315undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000069.1:397,424–397,573undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000279.1:1,160–1,264undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000019.1:455,264–455,431undeterminedbW0fewer than 2 genes could be modelled
rustHDADAS02000004.1:375,378–375,569undeterminedbW0fewer than 2 genes could be modelled
rustHDADAS02000034.1:74,038–74,265undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000046.1:49,423–49,629undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000653.1:1,098–1,223undeterminedbE0fewer than 2 genes could be modelled
rustHDADAS02000067.1:421,538–421,708undeterminedbW0fewer than 2 genes could be modelled
rustHDADAS02000193.1:52,978–53,142undeterminedbW0fewer than 2 genes could be modelled
rustHDADAS02000158.1:150,663–150,767undeterminedbW0fewer than 2 genes could be modelled
rustHDADAS02000015.1:209,311–209,424undeterminedbW0fewer than 2 genes could be modelled
rustHDADAS02000153.1:137,939–138,121undeterminedbW0fewer than 2 genes could be modelled
rustHDADAS02002778.1:1,129–1,404undeterminedbE0fewer than 2 genes could be modelled

Provenance

Genome file
Ptriticina1-1BBBDRace1.genome.fasta
Assembly
14,818 contigs · 135.3 Mb · N50 544.3 kb
Genome SHA-256
26f3a1783cceefa5caeff354a1dcd8e596a3b4878c611a6a39e65f3dbe159194
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Basidiomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Basidiomycota', 'phylum_taxid': 5204, 'deepest_rank': 'species', 'routing_taxid': 5262, 'routing_taxid_rank': 'family', 'flags': ['high_N'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Basidiomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 5262', 'routed_by': 'family taxid 5262 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T01:47:04Z
Run time
62 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits