PsorghiRO10H11247 Puccinia sorghi strain RO10H11247

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_rustHD_0: undetermined Basidiomycota:rustHD, confidence high, LAVV01008280:97053-105122

MATPredictFungiDBbE (core_MAT) LAVV01008280:97053-98577 - identity 51.3bEbW (core_MAT) LAVV01008280:103375-105122 + identity 54.8bWVP01_32g10 91281-94799 +: unspecified productVP01_32g10VP01_32g35 97053-98577 -: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0L6UXM5]VP01_32g35VP01_32g24 101763-102826 -: unspecified productVP01_32g24VP01_32g11 102342-103816 +: uncharacterized proteinVP01_32g11VP01_32g25 103375-105122 +: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0L6UXL5]VP01_32g25VP01_32g36 106369-107851 -: unspecified productVP01_32g36VP01_32g12 107630-111324 -: unspecified productVP01_32g1294 kb96 kb98 kb100 kb102 kb104 kb106 kb108 kb110 kbLAVV01008280
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
bEcore_MAT97053-98577 -annotatedVP01_32g35Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0L6UXM5]VP01_32g35 covers 100% of it on the same strand
bWcore_MAT103375-105122 +annotatedVP01_32g25Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0L6UXL5]VP01_32g25 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
VP01_32g24101763-102826 -unspecified product