PmacacaeP2C Pneumocystis sp. macacae isolate P2C

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_PM_0: P Ascomycota:PM, confidence medium, CM030734:163887-174093

MATPredictFungiDBmatMi (core_MAT) CM030734:163887-164027 - identity 60.417matMimatMc (core_MAT) CM030734:164243-165001 + identity 90.1matMcmatPi (core_MAT) CM030734:173398-174093 + identity 95.7matPiPMAC_001414 156765-159388 -: unspecified productPMAC_001414PMAC_001415 159435-160604 -: unspecified productPMAC_001415PMAC_001416 161700-162606 -: unspecified productPMAC_001416PMAC_001417 162904-163197 +: unspecified productPMAC_001417PMAC_001418 163693-163897 +: unspecified productPMAC_001418PMAC_001419 164243-165001 +: unspecified productPMAC_001419PMAC_001420 165649-173140 -: unspecified productPMAC_001420PMAC_001421 173398-174093 +: unspecified productPMAC_001421PMAC_001422 174732-175263 -: unspecified productPMAC_001422PMAC_001423 175439-179205 +: unspecified productPMAC_001423160 kb162 kb164 kb166 kb168 kb170 kb172 kb174 kb176 kb178 kbCM030734
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
matMicore_MAT163887-164027 -partialPMAC_001418unspecified productPMAC_001418 overlaps 8% but on the opposite strand
matMccore_MAT164243-165001 +annotatedPMAC_001419unspecified productPMAC_001419 covers 100% of it on the same strand
matPicore_MAT173398-174093 +annotatedPMAC_001421unspecified productPMAC_001421 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
PMAC_001418163693-163897 +unspecified product
PMAC_001420165649-173140 -unspecified product