PlutziiPb01 Paracoccidioides lutzii Pb01

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, KN294007:169849-188339

MATPredictFungiDBSLA2 (flanking_conserved) KN294007:169849-173388 + identity 87.9SLA2MAT1-1-1 (core_MAT) KN294007:178353-179713 - identity 58.2MAT1-1-1MAT1-1-4 (core_MAT) KN294007:181116-181804 - identity 35.7MAT1-1-4COX13 (flanking_conserved) KN294007:184972-185680 - identity 78.8COX13APN2 (flanking_conserved) KN294007:186156-188339 + identity 77.1APN2PAAG_05869 164925-167805 +: hypothetical proteinPAAG_05869PAAG_12114 168869-169517 -: hypothetical proteinPAAG_12114PAAG_05871 169849-173388 +: cytoskeleton assembly control protein Sla2PAAG_05871PAAG_05873 178353-179713 -: mating locus 1-1PAAG_05873PAAG_05874 181116-181804 -: hypothetical proteinPAAG_05874PAAG_05875 183114-184128 -: hypothetical proteinPAAG_05875PAAG_05876 184972-185680 -: hypothetical proteinPAAG_05876PAAG_05877 186156-188339 +: DNA-(apurinic or apyrimidinic site) lyasePAAG_05877PAAG_12115 189844-190065 +: hypothetical proteinPAAG_12115PAAG_05878 190576-196099 +: hypothetical proteinPAAG_05878168 kb172 kb176 kb180 kb184 kb188 kb192 kbKN294007
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved169849-173388 +annotatedPAAG_05871cytoskeleton assembly control protein Sla2PAAG_05871 covers 100% of it on the same strand
MAT1-1-1core_MAT178353-179713 -annotatedPAAG_05873mating locus 1-1PAAG_05873 covers 100% of it on the same strand
MAT1-1-4core_MAT181116-181804 -annotatedPAAG_05874hypothetical proteinPAAG_05874 covers 100% of it on the same strand
COX13flanking_conserved184972-185680 -annotatedPAAG_05876hypothetical proteinPAAG_05876 covers 100% of it on the same strand
APN2flanking_conserved186156-188339 +annotatedPAAG_05877DNA-(apurinic or apyrimidinic site) lyasePAAG_05877 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
PAAG_05875183114-184128 -hypothetical protein