PjiroveciiSE8 Pneumocystis jirovecii SE8

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_PM_0: M Ascomycota:PM, confidence high, CAKM01000262:47080-61327

MATPredictFungiDBmatPi (core_MAT) CAKM01000262:47080-48131 - identity 99.6matPimatMc (core_MAT) CAKM01000262:56442-57194 - identity 100.0matMcmatMi (core_MAT) CAKM01000262:57308-57517 + identity 98.57matMiPNEJI1_000364 42174-45889 -: unspecified productPNEJI1_000364PNEJI1_000365 46229-46773 +: unspecified productPNEJI1_000365PNEJI1_000366 47080-48131 -: unspecified productPNEJI1_000366PNEJI1_000367 48319-55796 +: unspecified productPNEJI1_000367PNEJI1_000369 59134-59777 +: unspecified productPNEJI1_000369PNEJI1_000370 60761-61936 +: unspecified productPNEJI1_000370PNEJI1_000371 62674-64800 +: unspecified productPNEJI1_000371PNEJI1_000372 64879-65176 -: unspecified productPNEJI1_000372PNEJI1_000373 65396-66007 -: unspecified productPNEJI1_00037344 kb48 kb52 kb56 kb60 kb64 kbCAKM01000262
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
matPicore_MAT47080-48131 -annotatedPNEJI1_000366unspecified productPNEJI1_000366 covers 100% of it on the same strand
matMccore_MAT56442-57194 -novel—no FungiDB gene overlaps this MATPredict gene
matMicore_MAT57308-57517 +novel—no FungiDB gene overlaps this MATPredict gene

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
PNEJI1_00036748319-55796 +unspecified product
PNEJI1_00036959134-59777 +unspecified product
PNEJI1_00037060761-61936 +unspecified product