PjiroveciiRU7 Pneumocystis jirovecii RU7

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_PM_0: M Ascomycota:PM, confidence high, LFWA01000009:211240-221394

MATPredictFungiDBmatPi (core_MAT) LFWA01000009:211240-211935 - identity 100.0matPimatMc (core_MAT) LFWA01000009:220321-221076 - identity 100.0matMcmatMi (core_MAT) LFWA01000009:221185-221394 + identity 100.0matMiT551_02157 206148-209788 -: unspecified productT551_02157T551_02158 210108-210649 +: Prefoldin subunit 4 [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZML0]T551_02158T551_02159 211240-211935 -: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZME4]T551_02159T551_02160 212197-215915 +: ATP-dependent chaperone ClpBT551_02160T551_02161 215418-219678 +: unspecified productT551_02161T551_02162 220321-221076 -: HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZME2]T551_02162T551_02163 222664-223571 +: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZMF2]T551_02163T551_02164 224638-225813 +: HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZME9]T551_02164208 kb210 kb212 kb214 kb216 kb218 kb220 kb222 kb224 kb226 kbLFWA01000009
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
matPicore_MAT211240-211935 -annotatedT551_02159Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZME4]T551_02159 covers 100% of it on the same strand
matMccore_MAT220321-221076 -annotatedT551_02162HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZME2]T551_02162 covers 100% of it on the same strand
matMicore_MAT221185-221394 +novel—no FungiDB gene overlaps this MATPredict gene

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
T551_02160212197-215915 +ATP-dependent chaperone ClpB
T551_02161215418-219678 +unspecified product