PchrysosporiumRP-78 Phanerochaete chrysosporium RP-78

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_HD_0: undetermined Basidiomycota:HD, confidence high, PchrRP-78_SC013:1063437-1076948

MATPredictFungiDBbeta_fg (flanking_conserved) PchrRP-78_SC013:1063437-1064779 + identity 56.7beta_fgHD1 (core_MAT) PchrRP-78_SC013:1070153-1072196 - identity 40.9HD1HD2 (core_MAT) PchrRP-78_SC013:1072398-1074098 + identity 37.4HD2MIP1 (flanking_conserved) PchrRP-78_SC013:1074457-1076948 - identity 84.6MIP1AGR57_12107 1058813-1061190 -: ABC1-domain containing proteinAGR57_12107AGR57_12108 1061392-1061807 -: expressed proteinAGR57_12108AGR57_12112 1063437-1064779 +: hypothetical proteinAGR57_12112AGR57_12113 1064888-1065576 -: expressed proteinAGR57_12113AGR57_12116 1068925-1069623 +: hypothetical proteinAGR57_12116AGR57_12117 1069833-1072282 -: expressed proteinAGR57_12117AGR57_12118 1072389-1074098 +: expressed proteinAGR57_12118AGR57_12119 1074457-1076948 -: mitochondrial intermediate peptidaseAGR57_12119AGR57_12120 1077232-1079484 -: hypothetical proteinAGR57_12120AGR57_12121 1079506-1080288 -: DUF1754-domain containing proteinAGR57_12121AGR57_12122 1080363-1081804 +: DUF1751-domain-containing proteinAGR57_121221060 kb1062 kb1064 kb1066 kb1068 kb1070 kb1072 kb1074 kb1076 kb1078 kb1080 kbPchrRP-78_SC013
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
beta_fgflanking_conserved1063437-1064779 +annotatedAGR57_12112hypothetical proteinAGR57_12112 covers 100% of it on the same strand
HD1core_MAT1070153-1072196 -annotatedAGR57_12117expressed proteinAGR57_12117 covers 100% of it on the same strand
HD2core_MAT1072398-1074098 +annotatedAGR57_12118expressed proteinAGR57_12118 covers 100% of it on the same strand
MIP1flanking_conserved1074457-1076948 -annotatedAGR57_12119mitochondrial intermediate peptidaseAGR57_12119 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
AGR57_121131064888-1065576 -expressed protein
AGR57_121161068925-1069623 +hypothetical protein