PcariniiB80 Pneumocystis carinii B80

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_PM_0: M Ascomycota:PM, confidence medium, LFVZ01000013:71357-80957

MATPredictFungiDBmatPi (core_MAT) LFVZ01000013:71357-72049 - identity 100.0matPimatMc (core_MAT) LFVZ01000013:80259-80957 - identity 100.0matMcT552_02827 66444-70226 -: XM_018371356.1T552_02827T552_02828 70308-70927 +: Prefoldin subunit 4 [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZDF4]T552_02828T552_02829 71312-72094 -: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZD63]T552_02829T552_04182 72274-76029 +: ATP-dependent chaperone ClpBT552_04182T552_04183 75653-79812 +: ANTH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZDF8]T552_04183T552_02831 80213-81003 -: HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZD79]T552_02831T552_04184 81822-82742 +: Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZD86]T552_04184T552_04185 83550-85016 +: HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZD76]T552_04185T552_02833 85045-87941 +: Anaphase-promoting complex subunit 5 [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZDG6]T552_0283368 kb70 kb72 kb74 kb76 kb78 kb80 kb82 kb84 kbLFVZ01000013
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
matPicore_MAT71357-72049 -annotatedT552_02829Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZD63]T552_02829 covers 100% of it on the same strand
matMccore_MAT80259-80957 -annotatedT552_02831HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZD79]T552_02831 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
T552_0418272274-76029 +ATP-dependent chaperone ClpB
T552_0418375653-79812 +ANTH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0W4ZDF8]