MATPredict · mating-type report

PcanisCanA

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:54 UTC by MATPredict 0.8.1

Result

Mating type

Pmedium confidence

Called loci 1

P PM family · Ascomycota

medium confidence
Gene order of the P locus on JACEFK010000014P locus: genes from left to right on JACEFK010000014, 206,624 to 216,433: matPi (core MAT gene, minus strand); matMc (core MAT gene, minus strand).208 kb210 kb212 kb214 kb216 kb80.2 kb more to contig end →called locusmatPi: core MAT gene, 206,624–207,319 (-), identity 86.6%, search hit onlymatPimatMc: core MAT gene, 215,711–216,433 (-), identity 77.0%, search hit onlymatMc
Gene order on JACEFK010000014. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on JACEFK010000014, 206,133 to 216,923PCANB_000843 206,624-207,319 (-): unspecified productPCANB_000843PCANB_000844 207,560-215,099 (+): unspecified productPCANB_000844PCANB_000845 215,711-216,433 (-): unspecified productPCANB_000845PCANB_000846 216,484-217,458 (-): unspecified productPCANB_000846
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
Location
JACEFK010000014:206,624–216,433 · 9.8 kb
Cross-lineage class
unassigned
Own genes
JACEFK010000014:206,624–216,433 · 9.8 kb
Locus
Genes of both idiomorphs at one locus.
Genes modelled
2 of 2 gene hits
Nearest contig end
80.7 kb
Region (samtools)
JACEFK010000014:206624-216433
Idiomorph scores
  • P 390.0
  • M 300.0

Margin over the next idiomorph: 90.0

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
matPicore MAThit onlyDIAMOND, proteome86.6cov 100.0%1.2e-143390 bits206,624–207,319 -–42068_ru7_PM_combinedPCANB_000843
matMccore MAThit onlyDIAMOND, proteome77.0cov 82.3%1.0e-107300 bits215,711–216,433 -–4754_b80_PM_combinedPCANB_000845
matMiexpected, not found–
matPcnot searchable: no reference protein in the database–

Withheld candidate loci 6

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (6).

Show the 6 withheld loci

Withheld loci (6)

familylocationidiomorph genesmodelledreason
PMJACEFK010000002:421,242–422,756PmatPi1fewer than 2 genes could be modelled
PMJACEFK010000014:83,002–83,256MmatMc0fewer than 2 genes could be modelled
PMJACEFK010000014:295,036–295,164MmatMc0fewer than 2 genes could be modelled
PMJACEFK010000011:353,384–353,581MmatMc0fewer than 2 genes could be modelled
PMJACEFK010000018:103,234–103,341MmatMi0fewer than 2 genes could be modelled
PMJACEFK010000010:297,928–298,170MmatMc0fewer than 2 genes could be modelled

Provenance

Genome file
PcanisCanA.genome.fasta
Assembly
33 contigs · 7.4 Mb · N50 422.4 kb
Genome SHA-256
48420acfd6dd784f3f9f7cf84768e343fec64ebea5ac7351cd260dce8854dc3b
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 44281, 'routing_taxid_rank': 'family', 'flags': ['short_genome', 'identical_to_reference'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 44281', 'routed_by': 'family taxid 44281 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T01:54:19Z
Run time
10 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits