PbrasiliensisPb18 Paracoccidioides brasiliensis Pb18

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, KN275963:1332301-1354008

MATPredictFungiDBAPN2 (flanking_conserved) KN275963:1332301-1334449 - identity 77.1APN2COX13 (flanking_conserved) KN275963:1334887-1335593 + identity 79.0COX13MAT1-1-4 (core_MAT) KN275963:1339152-1343457 + identity 54.65MAT1-1-4MAT1-2-1 (core_MAT) KN275963:1344727-1345826 - identity 51.8MAT1-2-1CIMG_00407 (core_MAT) KN275963:1346337-1347258 + identity 30.6CIMG_00407MAT1-2-4 (core_MAT) KN275963:1346754-1346864 + identity 35.135MAT1-2-4SLA2 (flanking_conserved) KN275963:1349640-1354008 - identity 88.7SLA2PADG_06114 1324649-1330148 -: hypothetical proteinPADG_06114PADG_12038 1330363-1330825 +: hypothetical proteinPADG_12038PADG_06115 1332301-1334449 -: hypothetical proteinPADG_06115PADG_06116 1334887-1335593 +: hypothetical proteinPADG_06116PADG_06117 1336444-1337471 +: hypothetical proteinPADG_06117PADG_06118 1344727-1345826 -: hypothetical proteinPADG_06118PADG_06119 1346337-1347258 +: hypothetical proteinPADG_06119PADG_06120 1349640-1354008 -: hypothetical proteinPADG_06120PADG_06122 1355364-1358244 -: hypothetical proteinPADG_06122PADG_12039 1358358-1358714 -: hypothetical proteinPADG_120391328 kb1332 kb1336 kb1340 kb1344 kb1348 kb1352 kb1356 kbKN275963
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
APN2flanking_conserved1332301-1334449 -annotatedPADG_06115hypothetical proteinPADG_06115 covers 100% of it on the same strand
COX13flanking_conserved1334887-1335593 +annotatedPADG_06116hypothetical proteinPADG_06116 covers 100% of it on the same strand
MAT1-1-4core_MAT1339152-1343457 +novel—no FungiDB gene overlaps this MATPredict gene
MAT1-2-1core_MAT1344727-1345826 -annotatedPADG_06118hypothetical proteinPADG_06118 covers 100% of it on the same strand
CIMG_00407core_MAT1346337-1347258 +annotatedPADG_06119hypothetical proteinPADG_06119 covers 100% of it on the same strand
MAT1-2-4core_MAT1346754-1346864 +annotatedPADG_06119hypothetical proteinPADG_06119 covers 100% of it on the same strand
SLA2flanking_conserved1349640-1354008 -annotatedPADG_06120hypothetical proteinPADG_06120 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
PADG_061171336444-1337471 +hypothetical protein