NglabratusCBS1382020 Nakaseomyces glabratus CBS138 2020

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MATsc_0: MATalpha Ascomycota:MATsc, confidence medium, CP048119:13592-15112

MATPredictFungiDBMATALPHA1 (core_MAT) CP048119:13592-14146 - identity 44.9MATALPHA1MATA2 (core_MAT) CP048119:14480-15112 + identity 52.6MATA2MATALPHA2 (core_MAT) CP048119:14480-15112 + identity 49.3MATALPHA2GVI51_B00033 11772-11890 -: tRNA-LeuGVI51_B00033GVI51_B00055 13395-13625 +: Ribosomal RNA small subunit methyltransferase NEP1 [Source:UniProtKB/TrEMBL;Acc:A0A0W0C632]GVI51_B00055GVI51_B00077 13592-14146 -: unspecified productGVI51_B00077GVI51_B00099 14480-15112 +: MTLalpha2GVI51_B00099GVI51_B00121 15813-16895 -: unspecified productGVI51_B00121GVI51_B00143 19543-20835 +: unspecified productGVI51_B001439 kb10 kb11 kb12 kb13 kb14 kb15 kb16 kb17 kb18 kb19 kb20 kbCP048119
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MATALPHA1core_MAT13592-14146 -annotatedGVI51_B00077unspecified productGVI51_B00077 covers 100% of it on the same strand
MATA2core_MAT14480-15112 +annotatedGVI51_B00099MTLalpha2GVI51_B00099 covers 100% of it on the same strand
MATALPHA2core_MAT14480-15112 +annotatedGVI51_B00099MTLalpha2GVI51_B00099 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
GVI51_B0005513395-13625 +Ribosomal RNA small subunit methyltransferase NEP1 [Source:UniProtKB/TrEMBL;Acc:A0A0W0C632]

Ascomycota_MATsc_1: MATalpha Ascomycota:MATsc, confidence medium, CP048119:115841-117289

MATPredictFungiDBMATALPHA1 (core_MAT) CP048119:115841-116272 - identity 44.9MATALPHA1MATA2 (core_MAT) CP048119:116729-117289 + identity 52.0MATA2MATALPHA2 (core_MAT) CP048119:116729-117289 + identity 48.4MATALPHA2GVI51_B01045 111975-112902 +: Ribosomal protein L37 [Source:UniProtKB/TrEMBL;Acc:Q874N9]GVI51_B01045GVI51_B01067 115185-115874 +: EMG1GVI51_B01067GVI51_B01089 115841-116272 -: MATalpha1GVI51_B01089GVI51_B01111 116729-117289 +: MATalpha2GVI51_B01111GVI51_B01133 117842-121585 +: BUD5GVI51_B01133GVI51_B01155 121738-121810 -: tRNA-ThrGVI51_B01155111 kb112 kb113 kb114 kb115 kb116 kb117 kb118 kb119 kb120 kb121 kb122 kbCP048119
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MATALPHA1core_MAT115841-116272 -annotatedGVI51_B01089MATalpha1GVI51_B01089 covers 100% of it on the same strand
MATA2core_MAT116729-117289 +annotatedGVI51_B01111MATalpha2GVI51_B01111 covers 100% of it on the same strand
MATALPHA2core_MAT116729-117289 +annotatedGVI51_B01111MATalpha2GVI51_B01111 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
GVI51_B01067115185-115874 +EMG1