NglabratusBG3993 Nakaseomyces glabratus BG3993

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MATsc_0: MATalpha Ascomycota:MATsc, confidence medium, CP053487:13056-14577

MATPredictFungiDBMATALPHA1 (core_MAT) CP053487:13056-13631 - identity 44.9MATALPHA1MATA2 (core_MAT) CP053487:13945-14577 + identity 52.6MATA2MATALPHA2 (core_MAT) CP053487:13945-14577 + identity 49.3MATALPHA2GW608_B00033 11237-11355 -: tRNA-LeuGW608_B00033GW608_B00055 12859-13089 +: Ribosomal RNA small subunit methyltransferase NEP1 [Source:UniProtKB/TrEMBL;Acc:A0A0W0C632]GW608_B00055GW608_B00077 13056-13631 -: unspecified productGW608_B00077GW608_B00099 MTLalpha2 13945-14577 +: MTLalpha2GW608_B00099 MTLalpha2GW608_B00121 15278-16360 -: unspecified productGW608_B00121GW608_B00143 19005-20297 +: unspecified productGW608_B001439 kb10 kb11 kb12 kb13 kb14 kb15 kb16 kb17 kb18 kb19 kbCP053487
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MATALPHA1core_MAT13056-13631 -annotatedGW608_B00077unspecified productGW608_B00077 covers 100% of it on the same strand
MATA2core_MAT13945-14577 +annotatedGW608_B00099 MTLalpha2MTLalpha2GW608_B00099 covers 100% of it on the same strand
MATALPHA2core_MAT13945-14577 +annotatedGW608_B00099 MTLalpha2MTLalpha2GW608_B00099 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
GW608_B0005512859-13089 +Ribosomal RNA small subunit methyltransferase NEP1 [Source:UniProtKB/TrEMBL;Acc:A0A0W0C632]