NcrassaOR74A Neurospora crassa OR74A

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, CM002236:1851640-1872435

MATPredictFungiDBCOX13 (flanking_conserved) CM002236:1851640-1852342 - identity 73.4COX13APN2 (flanking_conserved) CM002236:1853299-1855571 + identity 79.5APN2MAT1-1-3 (core_MAT) CM002236:1857194-1858331 - identity 100.0MAT1-1-3MAT1-1-2 (core_MAT) CM002236:1859093-1860424 + identity 97.3MAT1-1-2MAT1-1-1 (core_MAT) CM002236:1860834-1861834 + identity 100.0MAT1-1-1SLA2 (flanking_conserved) CM002236:1869097-1872435 - identity 80.2SLA2NCU01964 1843662-1847697 +: RING-9 proteinNCU01964NCU01963 eat-6 1848061-1851346 +: anaphase-promoting complex subunit Apc5NCU01963 eat-6NCU01962 eat-5 1851072-1852772 -: encodes anonymous transcript-5 protein, variant 1NCU01962 eat-5NCU01961 apn-2 1853043-1855879 +: DNA lyase Apn2, variant 1NCU01961 apn-2NCU01960 matA-3 1857194-1858469 -: mating-type protein A-3NCU01960 matA-3NCU01959 matA-2 1859093-1860424 +: mating-type protein A-2NCU01959 matA-2NCU01958 matA-1 1860692-1862194 +: mating-type protein A-1, variant 1NCU01958 matA-1NCU14009 1862928-1864066 +: unspecified productNCU14009NCU01957 eat-2A 1865597-1867210 -: AR2NCU01957 eat-2ANCU01956 eat-2 1868552-1872864 -: cytoskeleton assembly control protein Sla2NCU01956 eat-2NCU01955 apg-3 1873289-1875362 +: autophagocytosis protein Aut1NCU01955 apg-3NCU15016 tRNA(lys)-2 1875358-1875430 +: tRNA-LysNCU15016 tRNA(lys)-2NCU01954 msp-14 1875572-1877343 -: pre-mRNA-splicing factor cwc-24NCU01954 msp-141848 kb1852 kb1856 kb1860 kb1864 kb1868 kb1872 kb1876 kbCM002236
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved1851640-1852342 -annotatedNCU01962 eat-5encodes anonymous transcript-5 protein, variant 1NCU01962 covers 100% of it on the same strand
APN2flanking_conserved1853299-1855571 +annotatedNCU01961 apn-2DNA lyase Apn2, variant 1NCU01961 covers 100% of it on the same strand
MAT1-1-3core_MAT1857194-1858331 -annotatedNCU01960 matA-3mating-type protein A-3NCU01960 covers 100% of it on the same strand
MAT1-1-2core_MAT1859093-1860424 +annotatedNCU01959 matA-2mating-type protein A-2NCU01959 covers 100% of it on the same strand
MAT1-1-1core_MAT1860834-1861834 +annotatedNCU01958 matA-1mating-type protein A-1, variant 1NCU01958 covers 100% of it on the same strand
SLA2flanking_conserved1869097-1872435 -annotatedNCU01956 eat-2cytoskeleton assembly control protein Sla2NCU01956 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
NCU140091862928-1864066 +unspecified product
NCU01957 eat-2A1865597-1867210 -AR2