NalbidaNRRLY1402 – MATPredict report

Result

Mating type

undeterminedhigh confidence

undetermined: MAT gene without flanking genes, high confidence, 11.5 kb on LKPZ01000271.1. Gene order: bW · bE.

Called loci 1

undetermined bLocus family · Basidiomycota

high confidence

Gene order on LKPZ01000271.1. Scroll sideways to see the whole figure.

core MAT gene
gene model
tools disagree
alternate model

Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
The same genes also match: Basidiomycota:HD, Basidiomycota:Aalpha, Basidiomycota:aLocus.

Location: LKPZ01000271.1:4,061–15,584 · 11.5 kb
Own genes: LKPZ01000271.1:4,061–9,477 · 5.4 kb · the span runs 6.1 kb beyond these genes
Supported span: LKPZ01000271.1:4,061–9,879 · 5.8 kb · 5.7 kb of the reported span rests only on hits below 33 bits
Locus: A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled: 2 of 2 gene hits
Nearest contig end: 3.0 kb
Region (samtools): LKPZ01000271.1:4061-15584

Gene evidence

Gene	Role	Model	Identity %	E-value	Position (strand)	Exons	Reference record
bW	core MAT	gene modelminiprot	34.5cov 25.5%	3.0e-0650 bits	4,061–7,861 -	4	203535_cbs-10006_bLocus_b1
bE	core MAT	models differexonerateminiprot: 9,280–9,459, 33.3%	52.6cov 13.1%	4.3e-1369 bits	9,364–9,477 +	1	76777_atcc-42132_bLocus_b1

What was searched

Routing: Whole phylum. No curated family covers this lineage, so every family of the genome's phylum was searched. Family labels are less reliable here.
Families searched: Basidiomycota:HD, Basidiomycota:PR, Basidiomycota:MAT, Basidiomycota:Aalpha, Basidiomycota:Abeta, Basidiomycota:Balpha, Basidiomycota:Bbeta, Basidiomycota:aLocus, Basidiomycota:bLocus
Genetic code: 1
Taxonomy: local NCBI taxonomy snapshot 2026-10-01

Families searched but not called

family	reason	best % of genes found	genes found
Basidiomycota:HD	best cluster carried 0 modelled gene(s), below the 2 required to report a locus; none of its genes could be modelled	100.0	HD2
Basidiomycota:PR	best cluster carried 0 modelled gene(s), below the 2 required to report a locus; none of its genes could be modelled	50.0	pheromone_receptor
Basidiomycota:MAT	best cluster carried 0 modelled gene(s), below the 2 required to report a locus; none of its genes could be modelled	66.7	SXI2
Basidiomycota:Aalpha	best cluster carried 0 modelled gene(s), below the 2 required to report a locus; none of its genes could be modelled	100.0	Y
Basidiomycota:Abeta	no reference protein for this family is in the search set (none curated, or all withheld)	0.0	–
Basidiomycota:Balpha	best cluster carried 0 modelled gene(s), below the 2 required to report a locus; none of its genes could be modelled	50.0	bap3-3
Basidiomycota:Bbeta	best cluster carried 0 modelled gene(s), below the 2 required to report a locus; none of its genes could be modelled	25.0	bbp2-1
Basidiomycota:aLocus	best cluster carried 0 modelled gene(s), below the 2 required to report a locus; none of its genes could be modelled	50.0	pra1

Pheromone-receptor arrays

Receptor arrays occur for both mating and non-mating STE3-like receptors (the study found arrays holding paralogs beside the mating receptors in Coprinopsis cinerea and Schizophyllum commune), so array membership does not establish that a locus is a mating receptor. receptor_array_support is a flag on the evidence behind an array; it never changes a call, its confidence or its verification label. receptor_cassette_* fields describe pheromone-precursor cassette structure (2 or more strict-CAAX ORFs within 5 kb of a receptor locus; class C when that many of those ORFs also carry tblastn precursor homology). They are descriptive only: the CAAX scan is also what admits a PR call, so cassettes are circular as confirmation; own-species curated precursors are a self-hit for class C; tandem receptors may be merged into one locus. They never change a call, tier, label, confidence or count.

array	location	loci	calls	support	reasons
Basidiomycota:PR:LKPZ01000002.1:150126-153968	LKPZ01000002.1:150,126–153,968	2	0	supported	array of 2 or more receptor loci
Basidiomycota:PR:LKPZ01000213.1:26456-27703	LKPZ01000213.1:26,456–27,703	1	0	unsupported	a single receptor locus; no pheromone-precursor homology hit; 0 strict-CAAX pheromone ORFs

Withheld candidate loci 307

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (306); too few of the family's genes found (1).

Show the 307 withheld loci

Withheld loci (307)

family	location	idiomorph	genes	modelled	reason
HD	LKPZ01000191.1:2,425–25,423	undetermined	HD2	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000191.1:2,425–25,423	undetermined	Y	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000191.1:2,425–25,423	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000191.1:2,425–25,423	undetermined	bW	0	fewer than 2 genes could be modelled
PR	LKPZ01000191.1:2,425–25,423	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
MAT	LKPZ01000191.1:2,425–25,423	a	SXI2	0	fewer than 2 genes could be modelled
HD	LKPZ01000271.1:4,549–15,584	undetermined	HD1, HD2	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000271.1:4,549–15,584	undetermined	Y, Z	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000271.1:4,549–15,584	undetermined	pra1	0	fewer than 2 genes could be modelled
MAT	LKPZ01000271.1:4,549–15,584	alpha	SXI1	0	fewer than 2 genes could be modelled
HD	LKPZ01000162.1:14,434–14,535	undetermined	HD2	0	fewer than 2 genes could be modelled
HD	LKPZ01000140.1:13,631–13,780	undetermined	HD2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000064.1:5,010–5,393	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000064.1:61,312–61,494	undetermined	pra1	0	fewer than 2 genes could be modelled
HD	LKPZ01000064.1:93,433–106,077	undetermined	HD1	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000064.1:93,433–106,077	undetermined	pra1	0	fewer than 2 genes could be modelled
PR	LKPZ01000064.1:93,433–106,077	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
HD	LKPZ01000001.1:66,276–87,740	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000001.1:179,916–218,955	undetermined	bE, bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000001.1:179,916–218,955	undetermined	HD2	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000001.1:179,916–218,955	undetermined	pra1	0	fewer than 2 genes could be modelled
Bbeta	LKPZ01000001.1:179,916–218,955	undetermined	bbp2-1	0	fewer than 2 genes could be modelled
HD	LKPZ01000001.1:409,361–409,579	undetermined	HD1	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000001.1:440,785–443,460	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000001.1:440,785–443,460	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000029.1:30,705–60,797	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000029.1:134,847–135,041	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000070.1:18,721–44,644	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000035.1:71,997–72,263	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000047.1:142,363–147,442	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000038.1:28,211–61,517	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000038.1:28,211–61,517	undetermined	bE	0	fewer than 2 genes could be modelled
HD	LKPZ01000038.1:28,211–61,517	undetermined	MIP1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000038.1:88,639–116,843	undetermined	bE, bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000038.1:152,310–159,392	undetermined	HD2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000026.1:33,083–45,503	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000026.1:171,772–171,897	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000218.1:18,289–22,449	undetermined	pra1	0	fewer than 2 genes could be modelled
HD	LKPZ01000060.1:43,760–91,449	undetermined	HD2, MIP1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000060.1:43,760–91,449	undetermined	bE	0	fewer than 2 genes could be modelled
PR	LKPZ01000060.1:43,760–91,449	undetermined	fungal_mating_type_pheromone	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000010.1:12,105–12,482	undetermined	bW	0	fewer than 2 genes could be modelled
PR	LKPZ01000010.1:65,559–141,834	undetermined	pheromone_receptor, fungal_mating_type_pheromone	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000010.1:65,559–141,834	undetermined	bE	0	fewer than 2 genes could be modelled
Bbeta	LKPZ01000010.1:65,559–141,834	undetermined	bbp2-2	0	fewer than 2 genes could be modelled
HD	LKPZ01000010.1:65,559–141,834	undetermined	MIP1	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000012.1:53,076–53,282	undetermined	Z	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000012.1:79,126–98,590	undetermined	bE, bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000012.1:127,591–127,725	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000012.1:183,089–183,196	undetermined	HD2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000083.1:22,853–22,999	undetermined	bE	0	fewer than 2 genes could be modelled
HD	LKPZ01000083.1:59,238–88,267	undetermined	HD1, HD2	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000083.1:59,238–88,267	undetermined	Z	0	fewer than 2 genes could be modelled
HD	LKPZ01000021.1:20,637–35,816	undetermined	HD2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000021.1:86,544–89,807	undetermined	bE	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000021.1:188,139–198,494	undetermined	Z	0	fewer than 2 genes could be modelled
HD	LKPZ01000109.1:3,151–3,744	undetermined	HD2	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000109.1:52,910–53,104	undetermined	Z	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000022.1:3,287–3,511	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000022.1:72,850–127,547	undetermined	bE, bW	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000022.1:72,850–127,547	undetermined	Z	0	fewer than 2 genes could be modelled
PR	LKPZ01000022.1:72,850–127,547	undetermined	fungal_mating_type_pheromone	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000022.1:174,852–175,220	undetermined	bW	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000015.1:16,910–17,023	undetermined	Y	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000015.1:137,336–155,521	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000015.1:194,594–204,430	undetermined	bE, bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000015.1:194,594–204,430	undetermined	HD2	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000015.1:194,594–204,430	undetermined	Y	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000044.1:21,428–49,867	undetermined	Y	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000044.1:21,428–49,867	undetermined	bW	0	fewer than 2 genes could be modelled
PR	LKPZ01000044.1:21,428–49,867	undetermined	fungal_mating_type_pheromone	0	fewer than 2 genes could be modelled
MAT	LKPZ01000044.1:21,428–49,867	undetermined	RPL39	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000226.1:24,176–24,307	undetermined	Y	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000004.1:68,544–87,102	undetermined	bW	0	fewer than 2 genes could be modelled
Aalpha	LKPZ01000004.1:120,516–139,198	undetermined	Y	0	fewer than 2 genes could be modelled
HD	LKPZ01000004.1:252,785–273,942	undetermined	HD1	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000004.1:252,785–273,942	undetermined	pra1	0	fewer than 2 genes could be modelled
PR	LKPZ01000004.1:252,785–273,942	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
Bbeta	LKPZ01000004.1:252,785–273,942	undetermined	bbp2-2	0	fewer than 2 genes could be modelled
Balpha	LKPZ01000201.1:4,824–24,297	undetermined	bap3-3	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000201.1:4,824–24,297	undetermined	pra1	0	fewer than 2 genes could be modelled
HD	LKPZ01000201.1:4,824–24,297	undetermined	MIP1	0	fewer than 2 genes could be modelled
Balpha	LKPZ01000119.1:31,703–46,360	undetermined	bap3-3	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000119.1:31,703–46,360	undetermined	bW	0	fewer than 2 genes could be modelled
Bbeta	LKPZ01000119.1:31,703–46,360	undetermined	bbp2-2	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000111.1:14,253–38,418	undetermined	pra1	0	fewer than 2 genes could be modelled
Balpha	LKPZ01000111.1:71,253–71,393	undetermined	bap3-3	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000005.1:144,172–159,279	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000005.1:189,156–189,446	undetermined	bE	0	fewer than 2 genes could be modelled
HD	LKPZ01000005.1:257,169–275,178	undetermined	HD1	0	fewer than 2 genes could be modelled
Balpha	LKPZ01000213.1:26,456–27,703	undetermined	bar3	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000213.1:26,456–27,703	undetermined	pra1	0	fewer than 2 genes could be modelled
MAT	LKPZ01000213.1:26,456–27,703	undetermined	STE3	0	fewer than 2 genes could be modelled
PR	LKPZ01000213.1:26,456–27,703	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
Bbeta	LKPZ01000213.1:26,456–27,703	undetermined	bbr2	0	fewer than 2 genes could be modelled
HD	LKPZ01000002.1:13,706–13,888	undetermined	HD2	0	fewer than 2 genes could be modelled
HD	LKPZ01000002.1:150,126–168,617	undetermined	HD2	0	fewer than 2 genes could be modelled
Balpha	LKPZ01000002.1:150,126–168,617	undetermined	bar3	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000002.1:150,126–168,617	undetermined	pra1	0	fewer than 2 genes could be modelled
MAT	LKPZ01000002.1:150,126–168,617	undetermined	STE3	0	fewer than 2 genes could be modelled
PR	LKPZ01000002.1:150,126–168,617	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
Bbeta	LKPZ01000002.1:150,126–168,617	undetermined	bbr2	0	fewer than 2 genes could be modelled
MAT	LKPZ01000002.1:230,287–288,054	undetermined	PAN6, STE3	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000002.1:230,287–288,054	undetermined	bW	0	fewer than 2 genes could be modelled
PR	LKPZ01000002.1:230,287–288,054	undetermined	fungal_mating_type_pheromone	0	fewer than 2 genes could be modelled
Balpha	LKPZ01000104.1:37,435–61,833	undetermined	bar3	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000104.1:37,435–61,833	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000104.1:37,435–61,833	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000074.1:59,169–102,386	undetermined	HD2	0	fewer than 2 genes could be modelled
Balpha	LKPZ01000074.1:59,169–102,386	undetermined	bar3	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000074.1:59,169–102,386	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000074.1:59,169–102,386	undetermined	bE	0	fewer than 2 genes could be modelled
Bbeta	LKPZ01000074.1:59,169–102,386	undetermined	bbp2-2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000314.1:1,875–10,871	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000125.1:5,821–6,018	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000051.1:9,784–9,966	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000129.1:25,989–49,340	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000014.1:63,173–63,328	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000041.1:34,416–59,078	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000041.1:34,416–59,078	undetermined	bW	0	fewer than 2 genes could be modelled
PR	LKPZ01000041.1:34,416–59,078	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000041.1:144,462–153,709	undetermined	pra1	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000050.1:86,879–87,031	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000050.1:117,331–118,443	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000072.1:5,073–7,174	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000009.1:127,843–145,388	undetermined	bE, bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000009.1:194,670–194,780	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000102.1:58,547–58,780	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000091.1:39,184–53,939	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000330.1:976–10,591	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000011.1:39,459–39,638	undetermined	bE	0	fewer than 2 genes could be modelled
HD	LKPZ01000011.1:134,488–158,939	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000018.1:170,328–206,404	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000018.1:170,328–206,404	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000018.1:170,328–206,404	undetermined	mfa1	0	fewer than 2 genes could be modelled
Bbeta	LKPZ01000018.1:170,328–206,404	undetermined	bbp2_a	0	fewer than 2 genes could be modelled
HD	LKPZ01000019.1:170,980–185,899	undetermined	HD2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000158.1:17,955–31,264	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000081.1:13,594–22,780	undetermined	bE	0	fewer than 2 genes could be modelled
HD	LKPZ01000081.1:82,366–82,584	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000076.1:90,646–90,744	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000068.1:4,395–29,650	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000090.1:11,175–11,309	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000141.1:32,517–35,981	undetermined	pra1	0	fewer than 2 genes could be modelled
HD	LKPZ01000700.1:169–399	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000108.1:5,351–39,760	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000108.1:5,351–39,760	undetermined	bE	0	fewer than 2 genes could be modelled
PR	LKPZ01000108.1:5,351–39,760	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
HD	LKPZ01000508.1:526–756	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000661.1:323–571	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000156.1:41,234–41,404	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000013.1:30,251–30,457	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000013.1:69,261–112,706	undetermined	HD1	0	fewer than 2 genes could be modelled
PR	LKPZ01000013.1:69,261–112,706	undetermined	pheromone_receptor, pheromone_B43	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000013.1:69,261–112,706	undetermined	mfa1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000013.1:170,263–194,933	undetermined	bE, bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000013.1:170,263–194,933	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000143.1:47,934–48,164	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000186.1:34,567–34,728	undetermined	HD2	0	fewer than 2 genes could be modelled
HD	LKPZ01000126.1:47,565–47,852	undetermined	HD2	0	fewer than 2 genes could be modelled
HD	LKPZ01000006.1:63,494–63,736	undetermined	HD2	0	fewer than 2 genes could be modelled
HD	LKPZ01000006.1:160,343–160,453	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000006.1:203,965–214,804	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000006.1:259,134–266,861	undetermined	bE	0	fewer than 2 genes could be modelled
HD	LKPZ01000042.1:6,839–6,934	undetermined	HD2	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000042.1:35,732–35,887	undetermined	rba1	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000042.1:74,183–74,686	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000042.1:115,716–115,877	undetermined	bW	0	fewer than 2 genes could be modelled
PR	LKPZ01000084.1:63–822	undetermined	pheromone_B43, fungal_mating_type_pheromone	0	fewer than 2 genes could be modelled
PR	LKPZ01000057.1:36,395–54,472	undetermined	pheromone_B43, pheromone_B44	0	fewer than 2 genes could be modelled
PR	LKPZ01000052.1:59,469–64,729	undetermined	pheromone_receptor, pheromone_B43	0	fewer than 2 genes could be modelled
HD	LKPZ01000052.1:109,636–109,779	undetermined	HD2	0	fewer than 2 genes could be modelled
HD	LKPZ01000063.1:8,608–46,615	undetermined	HD1, HD2	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000048.1:120,071–131,875	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000048.1:120,071–131,875	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000093.1:13,888–25,462	undetermined	pra1	0	fewer than 2 genes could be modelled
HD	LKPZ01000093.1:71,756–77,850	undetermined	HD2	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000106.1:15,088–25,629	undetermined	pra1	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000146.1:2,724–15,995	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000163.1:3,511–7,269	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000030.1:5,778–27,858	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000030.1:113,635–113,949	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000088.1:64,009–70,776	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000088.1:64,009–70,776	undetermined	bE	0	fewer than 2 genes could be modelled
PR	LKPZ01000193.1:17,506–33,603	undetermined	pheromone_receptor, fungal_mating_type_pheromone	0	fewer than 2 genes could be modelled
HD	LKPZ01000097.1:40,811–79,930	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000097.1:40,811–79,930	undetermined	bW	0	fewer than 2 genes could be modelled
PR	LKPZ01000097.1:40,811–79,930	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000003.1:16,356–16,505	undetermined	pra1	0	fewer than 2 genes could be modelled
HD	LKPZ01000003.1:60,426–68,046	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000003.1:60,426–68,046	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000003.1:111,399–111,551	undetermined	bE	0	fewer than 2 genes could be modelled
PR	LKPZ01000003.1:150,158–188,371	undetermined	pheromone_receptor, fungal_mating_type_pheromone	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000003.1:150,158–188,371	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000003.1:150,158–188,371	undetermined	mfa1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000003.1:266,485–266,607	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000003.1:298,911–299,078	undetermined	bE	0	fewer than 2 genes could be modelled
HD	LKPZ01000079.1:26,705–26,809	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000079.1:64,451–69,949	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000118.1:3,781–3,933	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000118.1:39,656–39,781	undetermined	bE	0	fewer than 2 genes could be modelled
HD	LKPZ01000100.1:29,732–40,838	undetermined	HD2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000124.1:52,895–53,095	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000310.1:399–8,460	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000046.1:19,798–19,971	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000046.1:95,677–119,431	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000209.1:11,366–11,497	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000016.1:20,181–38,436	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000053.1:43,600–43,698	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000031.1:11,551–35,667	undetermined	bE, bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000031.1:170,229–170,441	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000390.1:3,641–3,826	undetermined	HD2	0	fewer than 2 genes could be modelled
HD	LKPZ01000117.1:20,046–20,186	undetermined	HD2	0	fewer than 2 genes could be modelled
HD	LKPZ01000199.1:7,338–7,535	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000214.1:24,042–24,161	undetermined	HD1	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000077.1:67,274–86,937	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000242.1:19,374–22,176	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000075.1:5,619–5,762	undetermined	pra1	0	fewer than 2 genes could be modelled
PR	LKPZ01000075.1:49,145–66,661	undetermined	pheromone_receptor, fungal_mating_type_pheromone	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000024.1:81,816–102,189	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000027.1:35,594–51,423	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000027.1:82,875–83,093	undetermined	HD2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000153.1:25,033–36,771	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000023.1:93,815–93,916	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000023.1:124,421–154,737	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000017.1:100,083–113,220	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000017.1:160,887–166,951	undetermined	bE, bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000071.1:100,906–111,832	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000049.1:22,248–22,568	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000049.1:125,470–125,589	undetermined	bE	0	fewer than 2 genes could be modelled
HD	LKPZ01000094.1:3,124–19,889	undetermined	HD2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000094.1:3,124–19,889	undetermined	bW	0	fewer than 2 genes could be modelled
PR	LKPZ01000094.1:3,124–19,889	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
HD	LKPZ01000094.1:65,612–76,830	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000028.1:100,402–102,585	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000374.1:553–5,573	undetermined	pra1	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000200.1:4,341–14,948	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000200.1:4,341–14,948	undetermined	bE	0	fewer than 2 genes could be modelled
PR	LKPZ01000200.1:4,341–14,948	undetermined	pheromone_receptor	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000183.1:25,443–32,616	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000086.1:30,959–31,153	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000086.1:73,916–92,153	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000086.1:73,916–92,153	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000175.1:3,534–3,941	undetermined	HD2	0	fewer than 2 genes could be modelled
HD	LKPZ01000073.1:62,278–86,204	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000073.1:62,278–86,204	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000247.1:16,657–18,907	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000247.1:16,657–18,907	undetermined	bW	0	fewer than 2 genes could be modelled
HD	LKPZ01000415.1:4,706–4,849	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000139.1:11,063–11,179	undetermined	HD1	0	fewer than 2 genes could be modelled
HD	LKPZ01000105.1:59,369–73,826	undetermined	HD1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000105.1:59,369–73,826	undetermined	bE	0	fewer than 2 genes could be modelled
MAT	LKPZ01000105.1:59,369–73,826	alpha	MFalpha	0	fewer than 2 genes could be modelled
HD	LKPZ01000062.1:80,309–83,604	undetermined	HD2	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000062.1:80,309–83,604	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000166.1:3,545–3,673	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000066.1:1,468–7,207	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000066.1:66,432–85,070	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000142.1:6,805–21,074	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000089.1:35,902–54,976	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000085.1:77,997–78,152	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000283.1:4,346–4,558	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000204.1:21,381–21,482	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000096.1:73,681–73,776	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000151.1:23,592–23,801	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000120.1:29,931–30,131	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000188.1:9,357–9,569	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000034.1:2,783–3,025	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000034.1:154,863–155,012	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000116.1:63,455–63,664	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000039.1:60,731–60,991	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000039.1:118,372–118,527	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000007.1:6,999–7,244	undetermined	bW	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000007.1:184,821–184,928	undetermined	rba1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000007.1:218,163–218,375	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000115.1:67,233–67,556	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000448.1:2,951–3,073	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000122.1:47,890–48,180	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000134.1:31,211–38,148	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000134.1:31,211–38,148	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000127.1:53,740–53,841	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000254.1:7,852–19,209	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000256.1:20,308–20,553	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000565.1:311–418	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000621.1:422–523	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000245.1:8,132–8,269	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000187.1:23,331–23,606	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000061.1:32,238–55,865	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000165.1:22,171–22,383	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000033.1:2,431–2,520	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000033.1:34,757–34,993	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000123.1:13,970–21,738	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000155.1:12,049–12,180	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000196.1:29,511–29,708	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000261.1:1,973–2,068	undetermined	rba1	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000327.1:6,791–6,985	undetermined	rba1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000054.1:13,690–13,887	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000433.1:367–534	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000235.1:20,563–20,709	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000262.1:6,453–6,683	undetermined	bE	0	fewer than 2 genes could be modelled
aLocus	LKPZ01000320.1:11,131–11,349	undetermined	pra1	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000154.1:27,593–27,793	undetermined	bW	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000114.1:60,617–60,781	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000065.1:109,941–110,114	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000055.1:34,593–34,739	undetermined	bE	0	fewer than 2 genes could be modelled
bLocus	LKPZ01000055.1:136,632–136,844	undetermined	bE	0	fewer than 2 genes could be modelled
PR	LKPZ01000124.1:12,261–16,092	undetermined	pheromone_receptor, caax_precursor	1	too few of the family's genes found

Provenance

Genome file: NalbidaNRRLY1402.genome.fasta
Assembly: 834 contigs · 24.8 Mb · N50 114.4 kb
Genome SHA-256: c45c4d8a3618bc64509d13fec41190516c32a3e244bc71031450289e5cb795f2
MATPredict: 0.8.1 (v0.8.1, 3a62e6302b)
Database: 86f18d232e4fe95d · 185 records
Taxonomy: local NCBI taxonomy snapshot 2026-10-01
Parameters: phylum=Basidiomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Basidiomycota', 'phylum_taxid': 5204, 'deepest_rank': 'species', 'routing_taxid': 5408, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Basidiomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 5408', 'routed_by': 'family taxid 5408 (phylum_fallback)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started: 2026-11-07T01:59:37Z
Run time: 83 s
Files: detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph: The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence: Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence: The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence: A single isolated gene hit, or no core MAT gene.
Model status: Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity: Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record: The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits

MATPredict reads an assembly; it is not a mating assay. Two idiomorphs in one assembly can come from a homothallic species, a mixed culture or a merged diploid assembly.
Fragmented assemblies can split a locus or lose its flanking genes; an uncalled genome is weak evidence of absence.
Lineages with no curated record are searched with the whole phylum's references; family labels there are less reliable.