MlusitanicusCBS277-49 Mucor lusitanicus CBS 277.49

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Mucoromycota_MAT_0: Minus Mucoromycota:MAT, confidence high, AMYB01000005:2202342-2236300

MATPredictFungiDBalgA (flanking_variable) AMYB01000005:2202342-2203751 - identity 66.9algAtptA (flanking_conserved) AMYB01000005:2204375-2205468 - identity 100.0tptAsexM (core_MAT) AMYB01000005:2206210-2206959 + identity 100.0sexMrnhA (flanking_conserved) AMYB01000005:2207099-2211232 + identity 99.8rnhAglrA (flanking_variable) AMYB01000005:2215764-2217336 - identity 86.5glrAMUCCIDRAFT_111720 2202342-2203751 -: Alginate lyase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A168KFV4]MUCCIDRAFT_111720MUCCIDRAFT_124985 2204080-2204358 -: Sugar phosphate transporter domain-containing protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A168KFW5]MUCCIDRAFT_124985MUCCIDRAFT_145196 2204375-2205468 -: Sugar phosphate transporter domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A162QIM5]MUCCIDRAFT_145196MUCCIDRAFT_153347 2206210-2206959 +: HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A168KFX3]MUCCIDRAFT_153347MUCCIDRAFT_143979 2207099-2211232 +: RNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A162T6S6]MUCCIDRAFT_143979MUCCIDRAFT_82733 2213093-2215666 +: Fungal-specific transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A168KFX6]MUCCIDRAFT_82733MUCCIDRAFT_184608 NDE4 2215673-2217336 -: NDE4MUCCIDRAFT_184608 NDE4MUCCIDRAFT_t136 2218750-2218821 +: tRNA-GluMUCCIDRAFT_t136MUCCIDRAFT_111726 2221757-2222455 -: unspecified productMUCCIDRAFT_111726MUCCIDRAFT_111728 2224908-2226009 -: No apical meristem-associated C-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A168KG11]MUCCIDRAFT_111728MUCCIDRAFT_164283 2233315-2235720 -: Reverse transcriptase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A168KG23]MUCCIDRAFT_164283MUCCIDRAFT_t137 2238497-2238568 +: tRNA-GluMUCCIDRAFT_t1372200 kb2204 kb2208 kb2212 kb2216 kb2220 kb2224 kb2228 kb2232 kb2236 kb2240 kbAMYB01000005
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
algAflanking_variable2202342-2203751 -annotatedMUCCIDRAFT_111720Alginate lyase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A168KFV4]MUCCIDRAFT_111720 covers 100% of it on the same strand
tptAflanking_conserved2204375-2205468 -annotatedMUCCIDRAFT_145196Sugar phosphate transporter domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A162QIM5]MUCCIDRAFT_145196 covers 100% of it on the same strand
sexMcore_MAT2206210-2206959 +annotatedMUCCIDRAFT_153347HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A168KFX3]MUCCIDRAFT_153347 covers 100% of it on the same strand
rnhAflanking_conserved2207099-2211232 +annotatedMUCCIDRAFT_143979RNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A162T6S6]MUCCIDRAFT_143979 covers 100% of it on the same strand
glrAflanking_variable2215764-2217336 -annotatedMUCCIDRAFT_184608 NDE4NDE4MUCCIDRAFT_184608 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
MUCCIDRAFT_1249852204080-2204358 -Sugar phosphate transporter domain-containing protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A168KFW5]
MUCCIDRAFT_827332213093-2215666 +Fungal-specific transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A168KFX6]
MUCCIDRAFT_t1362218750-2218821 +tRNA-Glu
MUCCIDRAFT_1117262221757-2222455 -unspecified product
MUCCIDRAFT_1117282224908-2226009 -No apical meristem-associated C-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A168KG11]
MUCCIDRAFT_1642832233315-2235720 -Reverse transcriptase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A168KG23]