MATPredict · mating-type report

LelongisporusNRRLYB-4239

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:07 UTC by MATPredict 0.8.1

Result

No MAT locus called

No family reached the evidence bar. That is weak evidence that the locus is absent: a fragmented assembly, or a lineage far from every reference, often explains it.

Next: check the withheld candidate loci below against a known locus, or type the strain from its reads.

Withheld candidate loci 34

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (31); too few of the family's genes found (2); MAT hit outside the flanking genes' span (1).

Show the 34 withheld loci

Withheld loci (34)

familylocationidiomorph genesmodelledreason
MTLCH981524:301,375–301,473AMTLA20fewer than 2 genes could be modelled
MTLCH981524:572,468–572,563alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981524:1,472,354–1,472,470alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981524:1,518,267–1,518,431alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981524:1,859,943–1,860,113AMTLA10fewer than 2 genes could be modelled
MTLCH981524:2,699,401–2,707,390alphaMTLalpha1, OBP11fewer than 2 genes could be modelled
MTLCH981524:3,373,712–3,373,924alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981527:380,049–380,201alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981527:1,093,938–1,094,027AMTLA20fewer than 2 genes could be modelled
MTLCH981527:1,625,985–1,626,197AMTLA10fewer than 2 genes could be modelled
MTLCH981528:104,380–104,478alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981528:949,660–949,797AMTLA10fewer than 2 genes could be modelled
MTLCH981532:360,211–360,336alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981525:1,278,884–1,278,991AMTLA10fewer than 2 genes could be modelled
MTLCH981525:1,370,879–1,372,253AMTLA2, MTLalpha10fewer than 2 genes could be modelled
MTLCH981525:1,464,928–1,465,044alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981526:61,324–61,512alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981526:434,173–434,322AMTLA20fewer than 2 genes could be modelled
MTLCH981526:707,355–707,477alphaMTLalpha10fewer than 2 genes could be modelled
MTLCH981526:911,385–911,474AMTLA20fewer than 2 genes could be modelled
MTLCH981526:1,334,655–1,334,759AMTLA10fewer than 2 genes could be modelled
MTLCH981526:1,779,450–1,779,545AMTLA20fewer than 2 genes could be modelled
MTLCH981533:35,213–35,398AMTLA10fewer than 2 genes could be modelled
MTLCH981533:342,023–342,127AMTLA10fewer than 2 genes could be modelled
MTLCH981534:85,261–85,350AMTLA10fewer than 2 genes could be modelled
MTLCH981534:403,879–404,070AMTLA20fewer than 2 genes could be modelled
MTLDS236868:6,096–6,344AMTLA20fewer than 2 genes could be modelled
MTLCH981530:689,775–690,329AMTLA10fewer than 2 genes could be modelled
MTLCH981531:324,875–324,985AMTLA20fewer than 2 genes could be modelled
MTLDS236872:6,253–6,369AMTLA20fewer than 2 genes could be modelled
MTLCH981528:224,708–240,960AMTLA2, PAP1, OBP1, PIK13MAT hit outside the flanking genes' span
MTLCH981528:854,025–877,559AMTLA1, MTLalpha20fewer than 2 genes could be modelled
MTLCH981524:1,624,975–1,628,370undeterminedPIK11too few of the family's genes found
MTLCH981527:648,731–654,538undeterminedPIK11too few of the family's genes found

Provenance

Genome file
LelongisporusNRRLYB-4239.genome.fasta
Assembly
28 contigs · 15.5 Mb · N50 2.0 Mb
Genome SHA-256
aa2444fb47d3a557d1d2a98a5675ae956a1075f4f034d6407dca0846beaa5648
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 766764, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 12, 'genetic_code_from': 'family taxid 766764', 'routed_by': 'family taxid 766764 (lineage)'}, genetic_code=12, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:07:03Z
Run time
28 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.

Limits