KmangroviensisCBS8507 Kwoniella mangroviensis CBS 8507

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, KI669474:1507734-1609942

MATPredictFungiDBRPL39 (core_MAT) KI669474:1507734-1508118 + identity 93.88RPL39STE3 (core_MAT) KI669474:1526084-1526956 - identity 56.4STE3MFalpha (core_MAT) KI669474:1536203-1536319 - identity 63.16MFalphaPAN6 (flanking_conserved) KI669474:1565452-1567077 - identity 60.7PAN6FAO1 (flanking_conserved) KI669474:1608388-1609942 + identity 28.9FAO1I203_02299 1500885-1502834 +: unspecified productI203_02299I203_02300 1503454-1506461 -: unspecified productI203_02300I203_02301 1508617-1512154 -: unspecified productI203_02301I203_02302 1512646-1514898 -: kinetochore protein NDC80I203_02302I203_02303 1515385-1517897 -: STE/STE20/PAKA protein kinaseI203_02303I203_02304 1518453-1522908 -: unspecified productI203_02304I203_02305 1523424-1525962 +: E1-like protein-activating enzyme Gsa7p/Apg7pI203_02305I203_02306 1526084-1526956 -: unspecified productI203_02306I203_02307 1528041-1531245 +: unspecified productI203_02307I203_02308 1531508-1532821 -: pre-60S factor REI1I203_02308I203_02309 1533187-1535738 +: unspecified productI203_02309I203_02310 1537319-1540146 -: unspecified productI203_02310I203_02311 1540501-1541162 -: unspecified productI203_02311I203_02312 1542705-1549730 +: chitin synthaseI203_02312I203_02313 1550508-1552055 -: unspecified productI203_02313I203_02314 1552623-1555454 -: unspecified productI203_02314I203_02315 1557766-1558292 -: unspecified productI203_02315I203_02316 1559392-1562081 -: unspecified productI203_02316I203_02317 1562436-1565242 +: ATPaseI203_02317I203_02318 1565452-1567077 -: pantoate-beta-alanine ligaseI203_02318I203_02319 1567481-1569891 +: U4/U6 small nuclear ribonucleoprotein PRP4I203_02319I203_02320 1570330-1573830 -: unspecified productI203_02320I203_02321 1574322-1575882 +: ribosomal RNA assembly proteinI203_02321I203_02322 1576298-1578171 -: serine/threonine-protein phosphatase 6 catalytic subunitI203_02322I203_02323 1578657-1580100 +: unspecified productI203_02323I203_02324 1580480-1584853 -: unspecified productI203_02324I203_02325 1586375-1590489 -: ATP-dependent RNA helicase DOB1I203_02325I203_02326 1590816-1591879 +: mitochondrial import inner membrane translocase subunitI203_02326I203_02327 1592277-1594364 -: unspecified productI203_02327I203_02328 1594401-1595307 -: unspecified productI203_02328I203_02329 1595790-1596670 -: unspecified productI203_02329I203_02330 1597025-1602113 +: unspecified productI203_02330I203_02331 1602515-1605141 -: unspecified productI203_02331I203_02332 1605497-1607979 +: endoplasmic reticulum proteinI203_02332I203_02333 1608388-1609942 +: unspecified productI203_02333I203_02334 1610210-1614913 -: unspecified productI203_023341510 kb1520 kb1530 kb1540 kb1550 kb1560 kb1570 kb1580 kb1590 kb1600 kb1610 kbKI669474
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
RPL39core_MAT1507734-1508118 +novel—no FungiDB gene overlaps this MATPredict gene
STE3core_MAT1526084-1526956 -annotatedI203_02306unspecified productI203_02306 covers 100% of it on the same strand
MFalphacore_MAT1536203-1536319 -novel—no FungiDB gene overlaps this MATPredict gene
PAN6flanking_conserved1565452-1567077 -annotatedI203_02318pantoate-beta-alanine ligaseI203_02318 covers 100% of it on the same strand
FAO1flanking_conserved1608388-1609942 +annotatedI203_02333unspecified productI203_02333 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
I203_023011508617-1512154 -unspecified product
I203_023021512646-1514898 -kinetochore protein NDC80
I203_023031515385-1517897 -STE/STE20/PAKA protein kinase
I203_023041518453-1522908 -unspecified product
I203_023051523424-1525962 +E1-like protein-activating enzyme Gsa7p/Apg7p
I203_023071528041-1531245 +unspecified product
I203_023081531508-1532821 -pre-60S factor REI1
I203_023091533187-1535738 +unspecified product
I203_023101537319-1540146 -unspecified product
I203_023111540501-1541162 -unspecified product
I203_023121542705-1549730 +chitin synthase
I203_023131550508-1552055 -unspecified product
I203_023141552623-1555454 -unspecified product
I203_023151557766-1558292 -unspecified product
I203_023161559392-1562081 -unspecified product
I203_023171562436-1565242 +ATPase
I203_023191567481-1569891 +U4/U6 small nuclear ribonucleoprotein PRP4
I203_023201570330-1573830 -unspecified product
I203_023211574322-1575882 +ribosomal RNA assembly protein
I203_023221576298-1578171 -serine/threonine-protein phosphatase 6 catalytic subunit
I203_023231578657-1580100 +unspecified product
I203_023241580480-1584853 -unspecified product
I203_023251586375-1590489 -ATP-dependent RNA helicase DOB1
I203_023261590816-1591879 +mitochondrial import inner membrane translocase subunit
I203_023271592277-1594364 -unspecified product
I203_023281594401-1595307 -unspecified product
I203_023291595790-1596670 -unspecified product
I203_023301597025-1602113 +unspecified product
I203_023311602515-1605141 -unspecified product
I203_023321605497-1607979 +endoplasmic reticulum protein