MATPredict · mating-type report

HuvarumAWRI3580

MAT locus above the FungiDB annotation (gene by gene)

Ascomycota

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:56 UTC by MATPredict 0.8.1

Result

No MAT locus called

No family reached the evidence bar. That is weak evidence that the locus is absent: a fragmented assembly, or a lineage far from every reference, often explains it.

Next: check the withheld candidate loci below against a known locus, or type the strain from its reads.

Withheld candidate loci 55

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (52); too few of the family's genes found (3).

Show the 55 withheld loci

Withheld loci (55)

familylocationidiomorph genesmodelledreason
MTLLPNN01000001:81,356–81,511AMTLA10fewer than 2 genes could be modelled
MTLLPNN01000001:145,431–145,544alphaMTLalpha10fewer than 2 genes could be modelled
MATscLPNN01000001:344,953–357,635MATalphaMATALPHA10fewer than 2 genes could be modelled
MTLLPNN01000001:344,953–357,635AMTLA20fewer than 2 genes could be modelled
MATscLPNN01000001:697,702–726,698MATalphaMATALPHA10fewer than 2 genes could be modelled
MATscLPNN01000001:1,041,643–1,045,475undeterminedMATA2, sla21fewer than 2 genes could be modelled
MTLLPNN01000001:1,041,643–1,045,475AMTLA20fewer than 2 genes could be modelled
MATscLPNN01000001:1,097,526–1,105,784MATaMATA10fewer than 2 genes could be modelled
MATscLPNN01000002:364,558–389,712MATalphaMATALPHA1, MATA20fewer than 2 genes could be modelled
MATscLPNN01000002:444,422–444,841MATaMATA10fewer than 2 genes could be modelled
MTLLPNN01000002:444,422–444,841AMTLA10fewer than 2 genes could be modelled
MTLLPNN01000002:497,182–510,649alphaMTLalpha1, MTLalpha20fewer than 2 genes could be modelled
MATscLPNN01000002:607,627–607,764undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscLPNN01000002:711,376–711,537undeterminedMATA20fewer than 2 genes could be modelled
MTLLPNN01000002:825,576–825,692AMTLA10fewer than 2 genes could be modelled
MTLLPNN01000002:937,238–955,218alphaMTLalpha1, OBP11fewer than 2 genes could be modelled
MATscLPNN01000009:142,702–151,981MATaMATA10fewer than 2 genes could be modelled
MTLLPNN01000009:142,702–151,981AMTLA10fewer than 2 genes could be modelled
MTLLPNN01000004:23,000–23,260AMTLA10fewer than 2 genes could be modelled
MATscLPNN01000004:113,696–113,836undeterminedMATALPHA20fewer than 2 genes could be modelled
MTLLPNN01000004:195,646–195,834alphaMTLalpha10fewer than 2 genes could be modelled
MTLLPNN01000004:611,029–639,163AMTLA1, MTLA20fewer than 2 genes could be modelled
MATscLPNN01000004:611,029–639,163MATaMATA10fewer than 2 genes could be modelled
MATscLPNN01000004:1,097,529–1,097,723undeterminedMATALPHA20fewer than 2 genes could be modelled
MTLLPNN01000004:1,097,529–1,097,723AMTLA10fewer than 2 genes could be modelled
MATscLPNN01000004:1,163,373–1,163,498MATalphaMATALPHA10fewer than 2 genes could be modelled
MTLLPNN01000004:1,596,552–1,596,680alphaMTLalpha10fewer than 2 genes could be modelled
MTLLPNN01000004:1,715,234–1,715,338AMTLA10fewer than 2 genes could be modelled
MATscLPNN01000004:1,897,564–1,897,677undeterminedMATALPHA20fewer than 2 genes could be modelled
MTLLPNN01000003:94,476–94,610AMTLA10fewer than 2 genes could be modelled
MTLLPNN01000003:218,129–218,389alphaMTLalpha10fewer than 2 genes could be modelled
MTLLPNN01000003:271,477–271,629alphaMTLalpha10fewer than 2 genes could be modelled
MTLLPNN01000003:405,077–405,235AMTLA10fewer than 2 genes could be modelled
MTLLPNN01000003:692,517–701,065alphaMTLA2, MTLalpha10fewer than 2 genes could be modelled
MATscLPNN01000003:767,191–767,316undeterminedMATALPHA2, MATA20fewer than 2 genes could be modelled
MATscLPNN01000003:935,212–935,325undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscLPNN01000005:481,024–503,726undeterminedMATA20fewer than 2 genes could be modelled
MTLLPNN01000005:481,024–503,726AMTLA20fewer than 2 genes could be modelled
MTLLPNN01000005:531,947–532,273AMTLA20fewer than 2 genes could be modelled
MATscLPNN01000005:805,477–805,722MATaMATA10fewer than 2 genes could be modelled
MTLLPNN01000005:933,076–933,228alphaMTLalpha10fewer than 2 genes could be modelled
MATscLPNN01000005:1,474,112–1,477,276MATaMATA1, MATA20fewer than 2 genes could be modelled
MTLLPNN01000011:24,354–24,479alphaMTLalpha10fewer than 2 genes could be modelled
MATscLPNN01000011:70,900–71,238undeterminedMATA20fewer than 2 genes could be modelled
MATscLPNN01000007:44,520–44,759undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscLPNN01000007:320,316–323,690undeterminedMATALPHA20fewer than 2 genes could be modelled
MATscLPNN01000007:403,578–435,580MATalphaMATALPHA10fewer than 2 genes could be modelled
MTLLPNN01000007:403,578–435,580AMTLA20fewer than 2 genes could be modelled
MTLLPNN01000007:626,965–627,078AMTLA20fewer than 2 genes could be modelled
MATscLPNN01000010:122,489–122,824undeterminedMATALPHA20fewer than 2 genes could be modelled
MTLLPNN01000010:213,347–213,454AMTLA10fewer than 2 genes could be modelled
MTLLPNN01000008:205,494–205,598alphaMTLalpha10fewer than 2 genes could be modelled
MTLLPNN01000001:697,702–726,698undeterminedPAP1, OBP12too few of the family's genes found
MTLLPNN01000001:1,097,526–1,105,784undeterminedPIK11too few of the family's genes found
MTLLPNN01000009:223,586–229,495undeterminedPIK11too few of the family's genes found

Provenance

Genome file
HuvarumAWRI3580.genome.fasta
Assembly
18 contigs · 8.8 Mb · N50 1.3 Mb
Genome SHA-256
aaf1737de7ecb0ef7109efa6ffc14fe942056faf4c43631550b1801468abaee0
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 34365, 'routing_taxid_rank': 'family', 'flags': ['short_genome'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 34365', 'routed_by': 'family taxid 34365 (phylum_fallback)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T01:56:26Z
Run time
24 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.

Limits