HcapsulatumNAm1 Histoplasma capsulatum NAm1

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, CH476655:4108229-4126313

MATPredictFungiDBSLA2 (flanking_conserved) CH476655:4108229-4112522 + identity 90.7SLA2MAT1-1-1 (core_MAT) CH476655:4115993-4116469 - identity 66.7MAT1-1-1MAT1-1-4 (core_MAT) CH476655:4118242-4119121 - identity 47.2MAT1-1-4COX13 (flanking_conserved) CH476655:4122183-4122890 - identity 70.3COX13APN2 (flanking_conserved) CH476655:4123278-4126313 + identity 84.1APN2HCAG_01165 4100781-4103560 +: predicted proteinHCAG_01165HCAG_01166 4105640-4107163 +: predicted proteinHCAG_01166HCAG_01167 4108229-4112522 +: conserved hypothetical proteinHCAG_01167HCAG_01168 4115993-4116469 -: predicted proteinHCAG_01168HCAG_01169 4116816-4117215 -: predicted proteinHCAG_01169HCAG_01170 4118242-4119121 -: predicted proteinHCAG_01170HCAG_01171 4120854-4121384 -: predicted proteinHCAG_01171HCAG_01172 4122183-4122890 -: predicted proteinHCAG_01172HCAG_01173 4123278-4126313 +: hypothetical proteinHCAG_01173HCAG_01174 4126842-4133292 +: predicted proteinHCAG_011744104 kb4108 kb4112 kb4116 kb4120 kb4124 kb4128 kbCH476655
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved4108229-4112522 +annotatedHCAG_01167conserved hypothetical proteinHCAG_01167 covers 100% of it on the same strand
MAT1-1-1core_MAT4115993-4116469 -annotatedHCAG_01168predicted proteinHCAG_01168 covers 100% of it on the same strand
MAT1-1-4core_MAT4118242-4119121 -annotatedHCAG_01170predicted proteinHCAG_01170 covers 100% of it on the same strand
COX13flanking_conserved4122183-4122890 -annotatedHCAG_01172predicted proteinHCAG_01172 covers 100% of it on the same strand
APN2flanking_conserved4123278-4126313 +annotatedHCAG_01173hypothetical proteinHCAG_01173 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
HCAG_011694116816-4117215 -predicted protein
HCAG_011714120854-4121384 -predicted protein