MATPredict · mating-type report

HcapsulatumG184AR

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:48 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-2medium confidence

Called loci 1

MAT1-2 MAT family · Ascomycota

medium confidence
Gene order of the MAT1-2 locus on JAEVHI010000004MAT1-2 locus: genes from left to right on JAEVHI010000004, 2,869,900 to 2,896,410: MAT1-1-1 (core MAT gene, minus strand); APN2 (conserved flank, minus strand); COX13 (conserved flank, plus strand); MAT1-1-4 (core MAT gene, plus strand); MAT1-1-3 (core MAT gene, minus strand); MAT1-2-1 (core MAT gene, minus strand); CIMG_00407 (core MAT gene, plus strand); MAT1-2-4 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).2,870 kb2,875 kb2,880 kb2,885 kb2,890 kb2,895 kb658.2 kb more to contig end →called locusMAT1-1-1: core MAT gene, 2,869,900–2,870,067 (-), identity 26.786%, search hit onlyMAT1-1-1APN2: conserved flank, 2,879,532–2,881,786 (-), identity 84.1%, search hit onlyAPN2COX13: conserved flank, 2,882,152–2,883,068 (+), identity 71.8%, search hit onlyCOX13MAT1-1-4: core MAT gene, 2,885,670–2,886,665 (+), identity 44.3%, search hit onlyMAT1-1-4MAT1-1-3: core MAT gene, 2,887,372–2,888,738 (-), identity 39.2%, search hit onlyMAT1-1-3 (lost to MAT1-2-1)MAT1-2-1: core MAT gene, 2,887,372–2,888,738 (-), identity 52.4%, search hit onlyMAT1-2-1CIMG_00407: core MAT gene, 2,889,306–2,889,563 (+), identity 37.21%, gene modelCIMG_00407MAT1-2-4: core MAT gene, 2,889,641–2,889,796 (+), identity 44.231%, search hit onlyMAT1-2-4SLA2: conserved flank, 2,892,115–2,896,410 (-), identity 90.7%, search hit onlySLA2
Gene order on JAEVHI010000004. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on JAEVHI010000004, 2,868,574 to 2,897,735I7I52_05404 2,868,043-2,869,443 (+): phosphoribosyl-aminoimidazole-succinocarboxamide synthaseI7I52_05404I7I52_05405 2,869,363-2,869,831 (-): unspecified productI7I52_05405I7I52_05406 2,870,165-2,870,931 (-): hypothetical RNAI7I52_05406I7I52_05407 2,871,183-2,875,235 (-): RNA polymerase II mediator complex component Srb8I7I52_05407I7I52_05408 2,875,398-2,875,802 (-): hypothetical RNAI7I52_05408I7I52_05409 2,876,135-2,877,445 (-): unspecified productI7I52_05409I7I52_05410 2,878,166-2,881,921 (-): DNA lyase Apn2I7I52_05410I7I52_05411 2,882,050-2,883,373 (+): cytochrome c oxidase subunit VIaI7I52_05411I7I52_05412 2,883,374-2,885,145 (+): unspecified productI7I52_05412I7I52_05413 2,885,146-2,888,644 (+): unspecified productI7I52_05413I7I52_05414 2,886,422-2,888,905 (-): mating locus 1-2-1I7I52_05414I7I52_05415 2,889,012-2,890,152 (+): unspecified productI7I52_05415I7I52_05416 2,891,062-2,896,599 (-): cytoskeleton assembly control proteinI7I52_05416I7I52_05417 2,896,856-2,898,890 (+): hypothetical RNAI7I52_05417I7I52_05418 2,897,128-2,900,538 (-): putative PH domain-containing proteinI7I52_05418
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • gene model
  • search hit only
Location
JAEVHI010000004:2,869,900–2,896,410 · 26.5 kb
Own genes
JAEVHI010000004:2,869,900–2,896,410 · 26.5 kb
Locus
Genes of both idiomorphs at one locus.
Genes modelled
6 of 9 gene hits
Nearest contig end
659.6 kb
Region (samtools)
JAEVHI010000004:2869900-2896410
Idiomorph scores
  • MAT1-2 297.0
  • MAT1-1 133.0

Margin over the next idiomorph: 164.0

Score: bitscore of the best core-gene hit for each idiomorph.

Overlapping hits resolved

Where genes of two idiomorphs hit the same place, the stronger hit was kept.

keptidentity %set asideidentity %overlap %basis
MAT1-2-152.4MAT1-1-339.2100.0higher identity

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MAT1-1-1core MAThit onlytblastn26.8cov 16.0%3.6e+0030 bits2,869,900–2,870,067 -–5518_3639_MAT_combinednone
APN2conserved flankhit onlyDIAMOND, proteome84.1cov 36.7%2.1e-259721 bits2,879,532–2,881,786 -–2903220_liq80xsp_MAT_combinedI7I52_05410
COX13conserved flankhit onlyDIAMOND, proteome71.8cov 100.0%7.8e-60174 bits2,882,152–2,883,068 +–199306_rmscc1040_MAT_MAT1-1I7I52_05411
MAT1-1-4core MAThit onlyDIAMOND, proteome44.3cov 67.9%4.6e-41133 bits2,885,670–2,886,665 +–199306_rmscc1040_MAT_MAT1-1I7I52_05413
I7I52_05414 (opposite strand)
MAT1-1-3core MATlost to MAT1-2-1, not countedhit onlyDIAMOND, proteome39.2cov 41.1%3.0e-1155 bits2,887,372–2,888,738 -–230073_uamh-1363_MAT_MAT1-1I7I52_05413 (opposite strand)
I7I52_05414
MAT1-2-1core MAThit onlyDIAMOND, proteome52.4cov 65.2%7.3e-101297 bits2,887,372–2,888,738 -–746128_af293_MAT_MAT1-2I7I52_05413 (opposite strand)
I7I52_05414
CIMG_00407core MATgene modelexonerate37.2cov 32.7%1.5e-1576 bits2,889,306–2,889,563 +15501_rs_MAT_MAT1-2I7I52_05415
MAT1-2-4core MAThit onlytblastn44.2cov 21.0%2.7e-1052 bits2,889,641–2,889,796 +–746128_af293_MAT_MAT1-2I7I52_05415
SLA2conserved flankhit onlyDIAMOND, proteome90.7cov 99.3%< 1e-1801,572 bits2,892,115–2,896,410 -–107463_unknown-1_MAT_MAT1-2I7I52_05416

Provenance

Genome file
HcapsulatumG184AR.genome.fasta
Assembly
12 contigs · 31.0 Mb · N50 4.1 Mb
Genome SHA-256
f22b0d6ecd70b04ca806cdec56558ebdd57d2572085851a9e9ca1a5397fe2a50
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 299071, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 299071', 'routed_by': 'family taxid 299071 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T01:47:30Z
Run time
69 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits