GtriticiR3-111a-1 Gaeumannomyces tritici R3-111a-1

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, GL385396:6307820-6323876

MATPredictFungiDBCOX13 (flanking_conserved) GL385396:6307820-6308500 + identity 61.9COX13SLA2 (flanking_conserved) GL385396:6312873-6316179 + identity 82.2SLA2MAT1-2-1 (core_MAT) GL385396:6318630-6320064 + identity 58.1MAT1-2-1APN2 (flanking_conserved) GL385396:6321991-6323876 - identity 81.8APN2GGTG_04689 6302081-6303053 +: unspecified productGGTG_04689GGTG_04690 6303720-6303989 +: unspecified productGGTG_04690GGTG_04691 6304687-6307510 +: RING-9 proteinGGTG_04691GGTG_04692 6307820-6308500 +: cytochrome c oxidase subunit VIaGGTG_04692GGTG_04693 6308797-6309850 +: 40S ribosomal protein S9GGTG_04693GGTG_04694 6309939-6310976 -: unspecified productGGTG_04694GGTG_04695 6311285-6312184 +: unspecified productGGTG_04695GGTG_04696 6312873-6316179 +: cytoskeleton assembly control protein Sla2GGTG_04696GGTG_04697 6318166-6320451 +: HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:J3NTU8]GGTG_04697GGTG_04698 6320636-6323978 -: DNA-(apurinic or apyrimidinic site) lyase 2GGTG_04698GGTG_04699 6324404-6327368 +: anaphase-promoting complex proteinGGTG_04699GGTG_04700 6328043-6328363 -: unspecified productGGTG_047006304 kb6308 kb6312 kb6316 kb6320 kb6324 kb6328 kbGL385396
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved6307820-6308500 +annotatedGGTG_04692cytochrome c oxidase subunit VIaGGTG_04692 covers 100% of it on the same strand
SLA2flanking_conserved6312873-6316179 +annotatedGGTG_04696cytoskeleton assembly control protein Sla2GGTG_04696 covers 100% of it on the same strand
MAT1-2-1core_MAT6318630-6320064 +annotatedGGTG_04697HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:J3NTU8]GGTG_04697 covers 100% of it on the same strand
APN2flanking_conserved6321991-6323876 -annotatedGGTG_04698DNA-(apurinic or apyrimidinic site) lyase 2GGTG_04698 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
GGTG_046936308797-6309850 +40S ribosomal protein S9
GGTG_046946309939-6310976 -unspecified product
GGTG_046956311285-6312184 +unspecified product