MATPredict · mating-type report

Fverticillioides7600

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:16 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on CM000583.1MAT1-1 locus: genes from left to right on CM000583.1, 951,483 to 976,198: SLA2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, minus strand); MAT1-2-7 (core MAT gene, minus strand); MAT1-1-2 (core MAT gene, minus strand); MAT1-1-3 (core MAT gene, plus strand); MAT1-2-1 (core MAT gene, plus strand); APN2 (conserved flank, minus strand); COX13 (conserved flank, plus strand).955 kb960 kb965 kb970 kb975 kb← 950.2 kb more to contig endcalled locusSLA2: conserved flank, 951,483–955,073 (+), identity 81.6%, search hit onlySLA2MAT1-1-1: core MAT gene, 957,491–958,685 (-), identity 99.7%, search hit onlyMAT1-1-1MAT1-2-7: core MAT gene, 958,148–958,366 (-), identity 30.38%, search hit onlyMAT1-2-7 (lost to MAT1-1-1)MAT1-1-2: core MAT gene, 959,142–960,494 (-), identity 95.5%, search hit onlyMAT1-1-2MAT1-1-3: core MAT gene, 960,903–961,652 (+), identity 89.8%, search hit onlyMAT1-1-3MAT1-2-1: core MAT gene, 961,497–961,685 (+), identity 33.33%, gene modelMAT1-2-1 (lost to MAT1-1-3)APN2: conserved flank, 962,162–964,392 (-), identity 86.4%, search hit onlyAPN2COX13: conserved flank, 964,909–965,670 (+), identity 70.7%, search hit onlyCOX13
Gene order on CM000583.1. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on CM000583.1, 950,249 to 977,433FVEG_02492 951,147-956,142 (+): hypothetical proteinFVEG_02492FVEG_02491 957,491-958,685 (-): mating-type protein MAT-1FVEG_02491FVEG_02490 959,142-960,494 (-): hypothetical proteinFVEG_02490FVEG_02489 960,903-961,652 (+): hypothetical proteinFVEG_02489FVEG_02488 961,978-964,690 (-): AP endonuclease 2FVEG_02488FVEG_02487 964,826-966,137 (+): cytochrome c oxidase subunit 6aFVEG_02487FVEG_02486 966,139-969,186 (+): hypothetical proteinFVEG_02486FVEG_02485 968,998-970,250 (-): complex I intermediate-associated protein 30, mitochondrialFVEG_02485FVEG_02484 970,324-971,833 (+): hypothetical proteinFVEG_02484FVEG_15068 971,989-974,921 (-): hypothetical proteinFVEG_15068FVEG_02481 975,846-978,853 (-): hypothetical proteinFVEG_02481
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • gene model
  • search hit only
  • MAT1-2-1 is a weak hit to the other idiomorph's gene and was not counted against the call.
  • MAT1-2-7 is a weak hit to the other idiomorph's gene and was not counted against the call.
Location
CM000583.1:951,483–976,198 · 24.7 kb
Own genes
CM000583.1:951,483–965,670 · 14.2 kb · the span runs 10.5 kb beyond these genes
Supported span
CM000583.1:951,483–965,670 · 14.2 kb · 10.5 kb of the reported span rests only on hits below 33 bits
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
7 of 8 gene hits
Nearest contig end
951.5 kb
Region (samtools)
CM000583.1:951483-976198
Idiomorph scores
  • MAT1-1 773.0
  • MAT1-2 29.3

Margin over the next idiomorph: 743.7

Score: bitscore of the best core-gene hit for each idiomorph.

Overlapping hits resolved

Where genes of two idiomorphs hit the same place, the stronger hit was kept.

keptidentity %set asideidentity %overlap %basis
MAT1-1-199.7MAT1-2-730.4100.0higher identity
MAT1-1-389.8MAT1-2-135.2100.0higher identity

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
SLA2conserved flankhit onlyDIAMOND, proteome81.6cov 100.0%< 1e-1801,372 bits951,483–955,073 +–107463_unknown-1_MAT_MAT1-2FVEG_02492
MAT1-1-1core MAThit onlyDIAMOND, proteome99.7cov 100.0%3.8e-281754 bits957,491–958,685 -–5127_mo44_MAT_MAT1-1FVEG_02491
MAT1-2-7core MATother idiomorph, not countedlost to MAT1-1-1, not countedhit onlytblastn30.4cov 39.0%3.2e-0235 bits958,148–958,366 -–5158_cbs114723_MAT_unswitchedFVEG_02491
MAT1-1-2core MAThit onlyDIAMOND, proteome95.5cov 98.3%3.8e-287773 bits959,142–960,494 -–5127_mo44_MAT_MAT1-1FVEG_02490
MAT1-1-3core MAThit onlyDIAMOND, proteome89.8cov 87.7%1.1e-94266 bits960,903–961,652 +–5127_mo44_MAT_MAT1-1FVEG_02489
MAT1-2-1core MATother idiomorph, not countedlost to MAT1-1-3, not countedgene modelexonerate1 internal stopdefective gene model33.3cov 50.0%5.9e+0029 bits961,497–961,685 +161372_suf959_MAT_MAT1-2FVEG_02489
APN2conserved flankhit onlyDIAMOND, proteome86.4cov 36.7%1.2e-229645 bits962,162–964,392 -–2903220_liq80xsp_MAT_combinedFVEG_02488
COX13conserved flankhit onlyDIAMOND, proteome70.7cov 89.2%2.3e-63182 bits964,909–965,670 +–578113_sxlc146_MAT_MAT1-2FVEG_02487

Withheld candidate loci 2

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (2).

Show the 2 withheld loci

Withheld loci (2)

familylocationidiomorph genesmodelledreason
MATCM000578.1:1,628,748–1,630,339MAT1-2MAT1-2-11too few of the family's genes found
MATCM000581.1:1,475,717–1,477,886MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
Fverticillioides7600.genome.fasta
Assembly
24 contigs · 41.9 Mb · N50 4.2 Mb
Genome SHA-256
439367e0a226b37349aee7cb7a97973c477234c0b3c32d9ceb5ca7d872672765
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 110618, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 110618', 'routed_by': 'family taxid 110618 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:15:20Z
Run time
78 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits