Foxysporum4287 Fusarium oxysporum f. sp. lycopersici 4287

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, CM000596.1:3019772-3037015

MATPredictFungiDBCOX13 (flanking_conserved) CM000596.1:3019772-3020533 - identity 69.8COX13APN2 (flanking_conserved) CM000596.1:3021054-3023286 + identity 86.4APN2MAT1-1-3 (core_MAT) CM000596.1:3023797-3024546 - identity 82.6MAT1-1-3MAT1-1-2 (core_MAT) CM000596.1:3024949-3026297 + identity 78.9MAT1-1-2MAT1-1-1 (core_MAT) CM000596.1:3026741-3027937 + identity 100.0MAT1-1-1SLA2 (flanking_conserved) CM000596.1:3030745-3031230 - identity 92.0SLA2MAT1-1-5 (core_MAT) CM000596.1:3036884-3037015 + identity 37.5MAT1-1-5FOXG_03610 3010686-3015085 -: hypothetical proteinFOXG_03610FOXG_03611 3015171-3018018 +: hypothetical proteinFOXG_03611FOXG_03612 3015198-3019361 -: anaphase-promoting complex subunit 5FOXG_03612FOXG_03613 3019456-3020626 -: cytochrome c oxidase subunit 6aFOXG_03613FOXG_03614 3020744-3023475 +: AP endonuclease 2FOXG_03614FOXG_17746 3023797-3024546 -: hypothetical proteinFOXG_17746FOXG_03615 3024949-3026297 +: hypothetical proteinFOXG_03615FOXG_03616 3026741-3027937 +: mating-type protein MAT-1FOXG_03616FOXG_18599 3028328-3029073 -: hypothetical proteinFOXG_18599FOXG_03617 3030745-3031230 -: hypothetical proteinFOXG_03617FOXG_03618 3031467-3033850 -: hypothetical proteinFOXG_03618FOXG_03619 3035342-3037501 -: 50S ribosomal protein L21eFOXG_03619FOXG_03620 3036403-3037669 +: 40S ribosomal protein S9FOXG_03620FOXG_03621 3037600-3039206 -: pre-mRNA-splicing factor SLU7FOXG_03621FOXG_03622 3039330-3044811 +: DNA polymerase zeta subunitFOXG_036223016 kb3020 kb3024 kb3028 kb3032 kb3036 kb3040 kbCM000596.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved3019772-3020533 -annotatedFOXG_03613cytochrome c oxidase subunit 6aFOXG_03613 covers 100% of it on the same strand
APN2flanking_conserved3021054-3023286 +annotatedFOXG_03614AP endonuclease 2FOXG_03614 covers 100% of it on the same strand
MAT1-1-3core_MAT3023797-3024546 -annotatedFOXG_17746hypothetical proteinFOXG_17746 covers 100% of it on the same strand
MAT1-1-2core_MAT3024949-3026297 +annotatedFOXG_03615hypothetical proteinFOXG_03615 covers 100% of it on the same strand
MAT1-1-1core_MAT3026741-3027937 +annotatedFOXG_03616mating-type protein MAT-1FOXG_03616 covers 100% of it on the same strand
SLA2flanking_conserved3030745-3031230 -annotatedFOXG_03617hypothetical proteinFOXG_03617 covers 100% of it on the same strand
MAT1-1-5core_MAT3036884-3037015 +partialFOXG_0361950S ribosomal protein L21eFOXG_03619 overlaps 100% but on the opposite strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FOXG_185993028328-3029073 -hypothetical protein
FOXG_036183031467-3033850 -hypothetical protein
FOXG_036193035342-3037501 -50S ribosomal protein L21e