FgraminearumPH-1 Fusarium graminearum PH-1

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, HG970333:3004628-3024863

MATPredictFungiDBCOX13 (flanking_conserved) HG970333:3004628-3005397 - identity 69.8COX13APN2 (flanking_conserved) HG970333:3005911-3008142 + identity 84.1APN2MAT1-1-3 (core_MAT) HG970333:3008846-3009585 - identity 99.4MAT1-1-3MAT1-1-2 (core_MAT) HG970333:3010042-3011622 + identity 100.0MAT1-1-2MAT1-1-1 (core_MAT) HG970333:3012302-3013392 + identity 100.0MAT1-1-1MAT1-2-1 (core_MAT) HG970333:3014004-3014868 - identity 99.6MAT1-2-1SLA2 (flanking_conserved) HG970333:3021305-3024863 - identity 80.9SLA2FGRAMPH1_01G11087 2998396-2999818 -: hypothetical proteinFGRAMPH1_01G11087FGRAMPH1_01G11089 2999904-3001461 +: complex I intermediate-associated protein 30FGRAMPH1_01G11089FGRAMPH1_01G11091 3001167-3003625 -: anaphase-promoting complex subunit 5FGRAMPH1_01G11091FGRAMPH1_01G11093 3004628-3005397 -: cytochrome c oxidase subunit 6aFGRAMPH1_01G11093FGRAMPH1_01G11095 APN2 3005911-3008142 +: ap endonuclease 2FGRAMPH1_01G11095 APN2FGRAMPH1_01G11097 MAT1-1-3 3008846-3009585 -: mating type 1-1-3FGRAMPH1_01G11097 MAT1-1-3FGRAMPH1_01G11099 3010042-3011622 +: mating type 1-1-2FGRAMPH1_01G11099FGRAMPH1_01G11101 MAT1-1-1 3012208-3013392 +: mating-type protein MAT-1FGRAMPH1_01G11101 MAT1-1-1FGRAMPH1_01G11103 MAT1-2-1 3013092-3014868 -: mating type 1-2-1FGRAMPH1_01G11103 MAT1-2-1FGRAMPH1_01G11105 3015616-3016448 -: mating-type MAT-1FGRAMPH1_01G11105FGRAMPH1_01G11107 3020457-3020838 +: unnamed protein productFGRAMPH1_01G11107FGRAMPH1_01G11109 3020797-3025198 -: probable cytoskeleton assembly control SLA2FGRAMPH1_01G11109FGRAMPH1_01G11111 3026347-3027455 -: 50S ribosomal L21eFGRAMPH1_01G11111FGRAMPH1_01G11113 3027499-3030196 +: 40S ribosomal protein S9FGRAMPH1_01G11113FGRAMPH1_01G11115 CCHC006 3028715-3030097 -: pre-mRNA-splicing factor slu7FGRAMPH1_01G11115 CCHC0063000 kb3004 kb3008 kb3012 kb3016 kb3020 kb3024 kb3028 kbHG970333
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved3004628-3005397 -annotatedFGRAMPH1_01G11093cytochrome c oxidase subunit 6aFGRAMPH1_01G11093 covers 100% of it on the same strand
APN2flanking_conserved3005911-3008142 +annotatedFGRAMPH1_01G11095 APN2ap endonuclease 2FGRAMPH1_01G11095 covers 100% of it on the same strand
MAT1-1-3core_MAT3008846-3009585 -annotatedFGRAMPH1_01G11097 MAT1-1-3mating type 1-1-3FGRAMPH1_01G11097 covers 100% of it on the same strand
MAT1-1-2core_MAT3010042-3011622 +annotatedFGRAMPH1_01G11099mating type 1-1-2FGRAMPH1_01G11099 covers 100% of it on the same strand
MAT1-1-1core_MAT3012302-3013392 +annotatedFGRAMPH1_01G11101 MAT1-1-1mating-type protein MAT-1FGRAMPH1_01G11101 covers 100% of it on the same strand
MAT1-2-1core_MAT3014004-3014868 -annotatedFGRAMPH1_01G11103 MAT1-2-1mating type 1-2-1FGRAMPH1_01G11103 covers 100% of it on the same strand
SLA2flanking_conserved3021305-3024863 -annotatedFGRAMPH1_01G11109probable cytoskeleton assembly control SLA2FGRAMPH1_01G11109 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FGRAMPH1_01G111053015616-3016448 -mating-type MAT-1
FGRAMPH1_01G111073020457-3020838 +unnamed protein product