EcrescensUAMH3008 Emmonsia crescens UAMH 3008

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, LCZI01000780:65782-84818

MATPredictFungiDBSLA2 (flanking_conserved) LCZI01000780:65782-69448 + identity 90.7SLA2CIMG_00407 (core_MAT) LCZI01000780:73884-74184 - identity 43.59CIMG_00407MAT1-2-4 (core_MAT) LCZI01000780:73954-74196 - identity 37.079MAT1-2-4MAT1-2-1 (core_MAT) LCZI01000780:75253-76392 + identity 52.9MAT1-2-1MAT1-1-4 (core_MAT) LCZI01000780:77714-78420 - identity 45.1MAT1-1-4COX13 (flanking_conserved) LCZI01000780:81440-82169 - identity 81.8COX13APN2 (flanking_conserved) LCZI01000780:82720-84818 + identity 79.5APN2EMCG_01398 61117-64037 +: SMP-LTD domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0G2J2X6]EMCG_01398EMCG_01399 65782-69448 +: Sla2 Src like adaptor 2 [Source:UniProtKB/TrEMBL;Acc:A0A0G2I2V8]EMCG_01399EMCG_01400 71156-71406 +: Ferredoxin--nitrite reductase [Source:UniProtKB/TrEMBL;Acc:A0A0G2J9T1]EMCG_01400EMCG_01401 73833-74762 -: unspecified productEMCG_01401EMCG_01402 75253-76392 +: HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0G2I2D5]EMCG_01402EMCG_01403 77714-78420 -: unspecified productEMCG_01403EMCG_01404 80115-80591 -: unspecified productEMCG_01404EMCG_01405 81440-82169 -: cytochrome c oxidase subunit 6aEMCG_01405EMCG_01406 82720-84818 +: AP endonuclease 2EMCG_01406EMCG_01407 87367-92784 +: Mediator of RNA polymerase II transcription subunit 12 [Source:UniProtKB/TrEMBL;Acc:A0A0G2I2D9]EMCG_0140764 kb68 kb72 kb76 kb80 kb84 kb88 kbLCZI01000780
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved65782-69448 +annotatedEMCG_01399Sla2 Src like adaptor 2 [Source:UniProtKB/TrEMBL;Acc:A0A0G2I2V8]EMCG_01399 covers 100% of it on the same strand
CIMG_00407core_MAT73884-74184 -annotatedEMCG_01401unspecified productEMCG_01401 covers 100% of it on the same strand
MAT1-2-4core_MAT73954-74196 -annotatedEMCG_01401unspecified productEMCG_01401 covers 100% of it on the same strand
MAT1-2-1core_MAT75253-76392 +annotatedEMCG_01402HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A0G2I2D5]EMCG_01402 covers 100% of it on the same strand
MAT1-1-4core_MAT77714-78420 -annotatedEMCG_01403unspecified productEMCG_01403 covers 100% of it on the same strand
COX13flanking_conserved81440-82169 -annotatedEMCG_01405cytochrome c oxidase subunit 6aEMCG_01405 covers 100% of it on the same strand
APN2flanking_conserved82720-84818 +annotatedEMCG_01406AP endonuclease 2EMCG_01406 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
EMCG_0140071156-71406 +Ferredoxin--nitrite reductase [Source:UniProtKB/TrEMBL;Acc:A0A0G2J9T1]
EMCG_0140480115-80591 -unspecified product