MATPredict · mating-type report

DhanseniiCBS767

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:59 UTC by MATPredict 0.8.1

Result

Mating type

Ahigh confidence

Called loci 1

A MTL family · Ascomycota

high confidence
Gene order of the A locus on CR382137A locus: genes from left to right on CR382137, 1,587,954 to 1,591,344: MTLalpha1 (core MAT gene, minus strand); MTLA1 (core MAT gene, minus strand); MTLA2 (core MAT gene, minus strand).1,588 kb1,589 kb1,590 kb1,591 kb415.9 kb more to contig end →called locusMTLalpha1: core MAT gene, 1,587,954–1,588,592 (-), identity 100.0%, search hit onlyMTLalpha1MTLA1: core MAT gene, 1,589,597–1,590,216 (-), identity 100.0%, search hit onlyMTLA1MTLA2: core MAT gene, 1,590,508–1,591,344 (-), identity 100.0%, search hit onlyMTLA2
Gene order on CR382137. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on CR382137, 1,587,654 to 1,591,644DEHA2E19085g 1,586,741-1,587,673 (+): DEHA2E19085p [Source:UniProtKB/TrEMBL;Acc:Q6BNT8]DEHA2E19085gDEHA2E19096g 1,587,954-1,588,592 (-): Alpha box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q6BNT6]DEHA2E19096gDEHA2E19118g 1,589,597-1,590,216 (-): Homeobox domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q6BNT5]DEHA2E19118gDEHA2E19140g 1,590,508-1,591,344 (-): DEHA2E19140p [Source:UniProtKB/TrEMBL;Acc:Q6BNT3]DEHA2E19140gDEHA2E19162g 1,591,607-1,591,822 (-): DEHA2E19162p [Source:UniProtKB/TrEMBL;Acc:Q6BNT2]DEHA2E19162g
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
Location
CR382137:1,587,954–1,591,344 · 3.4 kb
Cross-lineage class
MAT1-2
Own genes
CR382137:1,587,954–1,591,344 · 3.4 kb
Locus
Genes of both idiomorphs at one locus.
Genes modelled
3 of 3 gene hits
Nearest contig end
416.2 kb
Region (samtools)
CR382137:1587954-1591344
Idiomorph scores
  • A 483.0
  • alpha 427.0

Margin over the next idiomorph: 56.0

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MTLalpha1core MAThit onlyDIAMOND, proteome100.0cov 100.0%6.3e-158427 bits1,587,954–1,588,592 -–4959_cbs767_MTL_ADEHA2E19096g
MTLA1core MAThit onlyDIAMOND, proteome100.0cov 100.0%2.9e-128349 bits1,589,597–1,590,216 -–4959_cbs767_MTL_ADEHA2E19118g
MTLA2core MAThit onlyDIAMOND, proteome100.0cov 100.0%2.0e-178483 bits1,590,508–1,591,344 -–4959_cbs767_MTL_ADEHA2E19140g

Withheld candidate loci 40

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (37); too few of the family's genes found (2); MAT hit outside the flanking genes' span (1).

Show the 40 withheld loci

Withheld loci (40)

familylocationidiomorph genesmodelledreason
MTLCR382135:624,929–625,216alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382135:689,465–689,554alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382135:810,006–810,134alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382135:1,010,211–1,010,351alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382135:1,063,786–1,065,513AMTLA2, MTLalpha10fewer than 2 genes could be modelled
MTLCR382135:1,113,208–1,113,486AMTLA10fewer than 2 genes could be modelled
MTLCR382137:249,741–249,923AMTLA20fewer than 2 genes could be modelled
MTLCR382137:334,148–346,159AMTLA2, PIK11fewer than 2 genes could be modelled
MTLCR382137:553,678–553,830alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382137:635,620–635,766AMTLA10fewer than 2 genes could be modelled
MTLCR382137:749,527–749,859AMTLA20fewer than 2 genes could be modelled
MTLCR382137:805,142–805,249alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382137:1,668,959–1,669,048AMTLA10fewer than 2 genes could be modelled
MTLCR382137:1,855,848–1,856,207alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382139:712,121–712,264AMTLA10fewer than 2 genes could be modelled
MTLCR382139:1,159,381–1,159,527alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382139:1,364,868–1,364,960AMTLA20fewer than 2 genes could be modelled
MTLCR382139:1,706,519–1,706,758AMTLA10fewer than 2 genes could be modelled
MTLCR382138:155,651–155,767alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382138:751,812–752,105alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382138:832,783–832,890alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382138:1,080,654–1,080,797AMTLA10fewer than 2 genes could be modelled
MTLCR382138:1,544,385–1,544,510AMTLA20fewer than 2 genes could be modelled
MTLCR382138:1,617,156–1,617,257AMTLA20fewer than 2 genes could be modelled
MTLCR382138:1,832,595–1,856,346AMTLA1, MTLA20fewer than 2 genes could be modelled
MTLCR382138:1,907,833–1,907,967AMTLA10fewer than 2 genes could be modelled
MTLCR382133:380,844–381,071AMTLA20fewer than 2 genes could be modelled
MTLCR382133:576,913–577,089alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382133:773,788–773,919AMTLA10fewer than 2 genes could be modelled
MTLCR382133:1,137,549–1,137,647alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382136:75,576–75,671alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382136:471,143–471,334AMTLA10fewer than 2 genes could be modelled
MTLCR382136:917,945–918,043AMTLA20fewer than 2 genes could be modelled
MTLCR382134:78,454–78,684alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382134:398,148–398,357AMTLA20fewer than 2 genes could be modelled
MTLCR382134:748,174–748,362alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382134:1,340,523–1,340,618alphaMTLalpha10fewer than 2 genes could be modelled
MTLCR382137:882,001–897,501AMTLA2, PAP1, OBP1, PIK13MAT hit outside the flanking genes' span
MTLCR382135:1,415,550–1,416,818undeterminedOBP11too few of the family's genes found
MTLCR382139:1,101,223–1,104,432undeterminedPIK11too few of the family's genes found

Provenance

Genome file
DhanseniiCBS767.genome.fasta
Assembly
7 contigs · 12.2 Mb · N50 2.0 Mb
Genome SHA-256
c0c350e636f8c8f1d97587efd0e87889dc070bb71c6c83bc3c9c34b7f852ebee
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 766764, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 12, 'genetic_code_from': 'family taxid 766764', 'routed_by': 'family taxid 766764 (lineage)'}, genetic_code=12, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T01:59:01Z
Run time
27 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits