MATPredict · mating-type report

CpseudohaemuloniiB12108

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:53 UTC by MATPredict 0.8.1

Result

Mating type

Ahigh confidence

Called loci 1

A MTL family · Ascomycota

high confidence
Gene order of the A locus on PYFQ01000019A locus: genes from left to right on PYFQ01000019, 148,762 to 156,538: MTLA1 (core MAT gene, minus strand); MTLA2 (core MAT gene, minus strand); PIK1 (variable flank, minus strand); OBP1 (variable flank, minus strand); PAP1 (variable flank, plus strand).150 kb152 kb154 kb156 kb49.1 kb more to contig end →called locusMTLA1: core MAT gene, 148,762–149,139 (-), identity 52.0%, search hit onlyMTLA1MTLA2: core MAT gene, 149,346–149,963 (-), identity 52.0%, the two modelling tools disagreeMTLA2PIK1: variable flank, 150,053–152,689 (-), identity 76.9%, search hit onlyPIK1OBP1: variable flank, 153,400–154,677 (-), identity 85.6%, search hit onlyOBP1PAP1: variable flank, 154,904–156,538 (+), identity 87.7%, search hit onlyPAP1
Gene order on PYFQ01000019. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on PYFQ01000019, 148,374 to 156,926C7M61_004929 146,506-148,659 (+): unspecified productC7M61_004929C7M61_005294 148,762-149,139 (-): mating_type_MTLa1C7M61_005294C7M61_004930 150,053-152,689 (-): unspecified productC7M61_004930C7M61_004931 153,400-154,677 (-): unspecified productC7M61_004931C7M61_004932 154,904-156,538 (+): Poly(A) polymerase PAPaC7M61_004932C7M61_004933 156,566-158,047 (-): unspecified productC7M61_004933
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • variable flank
  • tools disagree
  • alternate model
  • search hit only
Location
PYFQ01000019:148,762–156,538 · 7.8 kb
Cross-lineage class
MAT1-2
Own genes
PYFQ01000019:148,762–156,538 · 7.8 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
5 of 5 gene hits
Nearest contig end
49.5 kb
Region (samtools)
PYFQ01000019:148762-156538
Idiomorph scores
  • A 115.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MTLA1core MAThit onlyDIAMOND, proteome52.0cov 61.4%8.3e-34108 bits148,762–149,139 -–498019_b11243_MTL_AC7M61_005294
MTLA2core MATmodels differexonerateminiprot: 149,346–149,963, 47.2%52.0cov 100.0%6.8e-31115 bits149,346–149,963 -2498019_b11243_MTL_Anone
PIK1variable flankhit onlyDIAMOND, proteome76.9cov 100.0%< 1e-1801,268 bits150,053–152,689 -–498019_b11243_MTL_AC7M61_004930
OBP1variable flankhit onlyDIAMOND, proteome85.6cov 98.6%6.9e-272734 bits153,400–154,677 -–498019_b11205_MTL_AC7M61_004931
PAP1variable flankhit onlyDIAMOND, proteome87.7cov 99.6%< 1e-180964 bits154,904–156,538 +–498019_b11243_MTL_AC7M61_004932

Withheld candidate loci 54

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (51); too few of the family's genes found (3).

Show the 54 withheld loci

Withheld loci (54)

familylocationidiomorph genesmodelledreason
MTLPYFQ01000004:14,807–14,932alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000004:401,083–401,277alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000004:623,633–623,809alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000007:372,303–372,422AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000007:539,039–539,167AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000015:39,942–40,040AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000010:59,998–60,129AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000010:368,195–368,401AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000010:404,777–404,878alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000002:86,674–103,755AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000002:783,004–783,120alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000001:87,693–87,800AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000001:345,759–345,866AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000001:522,362–522,466AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000001:655,119–655,220alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000001:982,716–982,808AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000001:1,131,747–1,132,073AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000001:1,173,015–1,173,131AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000001:1,219,309–1,219,488alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000001:1,363,713–1,363,889AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000001:2,530,520–2,530,738AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000001:2,592,505–2,592,672AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000011:89,856–89,960alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000011:186,273–186,371alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000011:211,560–211,793AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000014:32,556–32,696AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000014:258,979–259,218alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000006:25,721–25,834AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000006:138,024–138,143AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000006:283,519–283,647AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000006:363,257–363,598AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000006:479,606–479,698alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000008:57,857–58,069alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000008:245,058–245,189AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000008:293,931–302,371AMTLA1, MTLA20fewer than 2 genes could be modelled
MTLPYFQ01000008:495,213–495,362AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000013:157,038–157,127alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000013:255,266–272,071AMTLA1, MTLA20fewer than 2 genes could be modelled
MTLPYFQ01000018:43,751–44,005AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000018:102,503–102,751AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000022:74,799–75,080AMTLA20fewer than 2 genes could be modelled
MTLPYFQ01000022:117,592–117,693AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000005:57,011–57,106AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000005:219,334–234,094AMTLA2, MTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000005:408,901–409,047alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000012:106,458–106,730AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000012:135,314–135,514alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000012:241,646–241,921AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000003:755,035–755,130AMTLA10fewer than 2 genes could be modelled
MTLPYFQ01000021:14,146–14,280alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000024:43,912–48,920alphaMTLA2, MTLalpha10fewer than 2 genes could be modelled
MTLPYFQ01000004:336,047–337,306undeterminedOBP11too few of the family's genes found
MTLPYFQ01000007:308,146–313,899undeterminedPIK11too few of the family's genes found
MTLPYFQ01000015:123,523–126,579undeterminedPIK11too few of the family's genes found

Provenance

Genome file
CpseudohaemuloniiB12108.genome.fasta
Assembly
36 contigs · 12.6 Mb · N50 641.0 kb
Genome SHA-256
116abf9231bab9ffb352ffad4b38c23f3eb66360288df07202378eee3534d393
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 27319, 'routing_taxid_rank': 'family', 'flags': ['identical_to_reference'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 12, 'genetic_code_from': 'family taxid 27319', 'routed_by': 'family taxid 27319 (lineage)'}, genetic_code=12, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T01:52:39Z
Run time
22 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits