CposadasiiSilveira2022 Coccidioides posadasii strain Silveira 2022

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, CP075070:1000166-1012281

MATPredictFungiDBCOX13 (flanking_conserved) CP075070:1000166-1000701 - identity 97.5COX13APN2 (flanking_conserved) CP075070:1001329-1003398 + identity 98.2APN2MAT1-2-1 (core_MAT) CP075070:1004117-1005213 - identity 100.0MAT1-2-1CIMG_00407 (core_MAT) CP075070:1005691-1006587 + identity 98.9CIMG_00407MAT1-2-4 (core_MAT) CP075070:1006329-1006451 + identity 34.146MAT1-2-4SLA2 (flanking_conserved) CP075070:1008346-1012281 - identity 99.8SLA2D8B26_005245 997065-997759 +: Related to DNA damage-responsive protein 48 [Source:UniProtKB/TrEMBL;Acc:E9D4N7]D8B26_005245D8B26_005246 997922-999656 +: Glycosyltransferase family 71 protein [Source:UniProtKB/TrEMBL;Acc:A0A8E6GH48]D8B26_005246D8B26_005247 999826-1000772 -: Cytochrome c oxidase subunit 6A, mitochondrialD8B26_005247D8B26_005248 1001329-1003398 +: Class II abasic (AP) endonucleaseD8B26_005248D8B26_005249 1003737-1005214 -: HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A8E6GH99]D8B26_005249D8B26_005250 1005691-1006587 +: unspecified productD8B26_005250D8B26_005251 1008014-1012281 -: sla2 Src-like adaptor 2D8B26_005251D8B26_005252 1012778-1015727 -: SMP-LTD domain-containing protein [Source:UniProtKB/TrEMBL;Acc:E9D4P5]D8B26_005252D8B26_005253 1016473-1021760 +: RNA polymerase II mediator complex subunitD8B26_005253996 kb998 kb1000 kb1002 kb1004 kb1006 kb1008 kb1010 kb1012 kb1014 kb1016 kbCP075070
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved1000166-1000701 -annotatedD8B26_005247Cytochrome c oxidase subunit 6A, mitochondrialD8B26_005247 covers 100% of it on the same strand
APN2flanking_conserved1001329-1003398 +annotatedD8B26_005248Class II abasic (AP) endonucleaseD8B26_005248 covers 100% of it on the same strand
MAT1-2-1core_MAT1004117-1005213 -annotatedD8B26_005249HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A8E6GH99]D8B26_005249 covers 100% of it on the same strand
CIMG_00407core_MAT1005691-1006587 +annotatedD8B26_005250unspecified productD8B26_005250 covers 100% of it on the same strand
MAT1-2-4core_MAT1006329-1006451 +annotatedD8B26_005250unspecified productD8B26_005250 covers 100% of it on the same strand
SLA2flanking_conserved1008346-1012281 -annotatedD8B26_005251sla2 Src-like adaptor 2D8B26_005251 covers 100% of it on the same strand