CposadasiiSilveira Coccidioides posadasii str. Silveira

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, GL636492:934286-946534

MATPredictFungiDBCOX13 (flanking_conserved) GL636492:934286-934954 - identity 98.5COX13APN2 (flanking_conserved) GL636492:935582-937638 + identity 98.3APN2MAT1-2-1 (core_MAT) GL636492:938370-939499 - identity 100.0MAT1-2-1CIMG_00407 (core_MAT) GL636492:939944-940840 + identity 98.9CIMG_00407MAT1-2-4 (core_MAT) GL636492:940582-940704 + identity 34.146MAT1-2-4SLA2 (flanking_conserved) GL636492:942599-946534 - identity 99.8SLA2CPSG_05155 931318-931783 +: conserved hypothetical proteinCPSG_05155CPSG_05156 932331-933909 +: conserved hypothetical proteinCPSG_05156CPSG_05157 933990-935008 -: cytochrome c oxidase subunit VIaCPSG_05157CPSG_05158 935486-937811 +: DNA lyaseCPSG_05158CPSG_05159 937956-939623 -: HMG domain-containing proteinCPSG_05159CPSG_05160 939944-940840 +: conserved hypothetical proteinCPSG_05160CPSG_05161 941052-941477 -: predicted proteinCPSG_05161CPSG_05162 941651-946730 -: cytoskeleton assembly control protein Sla2CPSG_05162CPSG_05163 946936-949993 -: conserved hypothetical proteinCPSG_05163CPSG_05164 949932-950531 +: predicted proteinCPSG_05164CPSG_05165 950873-956476 +: conserved hypothetical proteinCPSG_05165930 kb932 kb934 kb936 kb938 kb940 kb942 kb944 kb946 kb948 kb950 kbGL636492
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved934286-934954 -annotatedCPSG_05157cytochrome c oxidase subunit VIaCPSG_05157 covers 100% of it on the same strand
APN2flanking_conserved935582-937638 +annotatedCPSG_05158DNA lyaseCPSG_05158 covers 100% of it on the same strand
MAT1-2-1core_MAT938370-939499 -annotatedCPSG_05159HMG domain-containing proteinCPSG_05159 covers 100% of it on the same strand
CIMG_00407core_MAT939944-940840 +annotatedCPSG_05160conserved hypothetical proteinCPSG_05160 covers 100% of it on the same strand
MAT1-2-4core_MAT940582-940704 +annotatedCPSG_05160conserved hypothetical proteinCPSG_05160 covers 100% of it on the same strand
SLA2flanking_conserved942599-946534 -annotatedCPSG_05162cytoskeleton assembly control protein Sla2CPSG_05162 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CPSG_05161941052-941477 -predicted protein