CposadasiiRMSCC3488 Coccidioides posadasii RMSCC 3488

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, DS268109:6873152-6885952

MATPredictFungiDBSLA2 (flanking_conserved) DS268109:6873152-6877087 + identity 99.8SLA2MAT1-1-1 (core_MAT) DS268109:6879184-6880406 - identity 100.0MAT1-1-1MAT1-1-4 (core_MAT) DS268109:6880836-6882041 - identity 100.0MAT1-1-4APN2 (flanking_conserved) DS268109:6882830-6884655 - identity 99.8APN2COX13 (flanking_conserved) DS268109:6885257-6885952 + identity 100.0COX13CPAG_02482 6863226-6868812 -: hypothetical proteinCPAG_02482CPAG_02483 6869155-6869754 -: hypothetical proteinCPAG_02483CPAG_02484 6869691-6872750 +: hypothetical proteinCPAG_02484CPAG_02485 6872956-6877465 +: huntingtin-interacting protein 1CPAG_02485CPAG_02486 6878205-6878630 +: hypothetical proteinCPAG_02486CPAG_02487 6879184-6880406 -: mating-type protein MAT-1CPAG_02487CPAG_02488 6880836-6882041 -: hypothetical proteinCPAG_02488CPAG_02489 6882830-6884655 -: DNA-(apurinic or apyrimidinic site) lyase 2CPAG_02489CPAG_02490 6885257-6885952 +: hypothetical proteinCPAG_02490CPAG_02491 6886837-6887888 -: hypothetical proteinCPAG_02491CPAG_02492 6890146-6891031 -: hypothetical proteinCPAG_024926870 kb6872 kb6874 kb6876 kb6878 kb6880 kb6882 kb6884 kb6886 kb6888 kb6890 kbDS268109
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved6873152-6877087 +annotatedCPAG_02485huntingtin-interacting protein 1CPAG_02485 covers 100% of it on the same strand
MAT1-1-1core_MAT6879184-6880406 -annotatedCPAG_02487mating-type protein MAT-1CPAG_02487 covers 100% of it on the same strand
MAT1-1-4core_MAT6880836-6882041 -annotatedCPAG_02488hypothetical proteinCPAG_02488 covers 100% of it on the same strand
APN2flanking_conserved6882830-6884655 -annotatedCPAG_02489DNA-(apurinic or apyrimidinic site) lyase 2CPAG_02489 covers 100% of it on the same strand
COX13flanking_conserved6885257-6885952 +annotatedCPAG_02490hypothetical proteinCPAG_02490 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CPAG_024866878205-6878630 +hypothetical protein