MATPredict · mating-type report

CposadasiiRMSCC2133

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:06 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on DS544195.1MAT1-1 locus: genes from left to right on DS544195.1, 994,111 to 1,006,740: COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand); MAT1-1-4 (core MAT gene, plus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).994 kb996 kb998 kb1,000 kb1,002 kb1,004 kb1,006 kb← 993.5 kb more to contig endcalled locusCOX13: conserved flank, 994,111–994,629 (-), identity 100.0%, the two modelling tools disagreeCOX13APN2: conserved flank, 994,968–997,055 (+), identity 100.0%, the two modelling tools disagreeAPN2MAT1-1-4: core MAT gene, 997,847–998,881 (+), identity 100.0%, gene modelMAT1-1-4MAT1-1-1: core MAT gene, 999,482–1,000,701 (+), identity 100.0%, gene modelMAT1-1-1SLA2: conserved flank, 1,002,808–1,006,740 (-), identity 99.71%, gene modelSLA2
Gene order on DS544195.1. Scroll sideways to see the whole figure.
  • core MAT gene
  • conserved flank
  • gene model
  • tools disagree
  • alternate model
Location
DS544195.1:994,111–1,006,740 · 12.6 kb
Own genes
DS544195.1:994,111–1,006,740 · 12.6 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
5 of 5 gene hits
Nearest contig end
994.1 kb
Region (samtools)
DS544195.1:994111-1006740
Idiomorph scores
  • MAT1-1 599.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference record
COX13conserved flankmodels differexonerateminiprot: 993,934–994,629, 100.0%100.0cov 100.0%4.4e-72233 bits994,111–994,629 -35501_h538-4_MAT_MAT1-1
APN2conserved flankmodels differexonerateminiprot: 994,968–997,058, 97.0%100.0cov 100.0%< 1e-1801,090 bits994,968–997,055 +6199306_rmscc1040_MAT_MAT1-1
MAT1-1-4core MATgene modelexonerate100.0cov 100.0%2.7e-120377 bits997,847–998,881 +6199306_rmscc1040_MAT_MAT1-1
MAT1-1-1core MATgene modelexonerate100.0cov 100.0%< 1e-180599 bits999,482–1,000,701 +2199306_rmscc1040_MAT_MAT1-1
SLA2conserved flankgene modelexonerate99.7cov 100.0%< 1e-180911 bits1,002,808–1,006,740 -125501_rs_MAT_MAT1-2

Withheld candidate loci 15

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (14); too few of the family's genes found (1).

Show the 15 withheld loci

Withheld loci (15)

familylocationidiomorph genesmodelledreason
MATDS544195.1:1,207,400–1,231,676MAT1-1MAT1-1-1, APN20fewer than 2 genes could be modelled
MATDS544196.1:170,652–212,952MAT1-2MAT1-2-1, COX131fewer than 2 genes could be modelled
MATDS544196.1:324,618–359,650MAT1-1MAT1-1-1, MAT1-2-1, SLA20fewer than 2 genes could be modelled
MATDS544196.1:709,034–730,071MAT1-2MAT1-2-1, APN20fewer than 2 genes could be modelled
MATDS544196.1:1,318,033–1,343,056undeterminedAPN2, SLA2, COX130fewer than 2 genes could be modelled
MATDS544196.1:1,586,733–1,605,112MAT1-1MAT1-1-1, SLA20fewer than 2 genes could be modelled
MATDS544197.1:861,665–882,622MAT1-2MAT1-1-1, MAT1-2-1, APN20fewer than 2 genes could be modelled
MATDS544197.1:2,889,087–2,904,823MAT1-1MAT1-1-1, APN2, MAT1-1-50fewer than 2 genes could be modelled
MATDS544197.1:3,408,799–3,432,041MAT1-1MAT1-1-1, COX130fewer than 2 genes could be modelled
MATDS544200.1:617,869–637,975MAT1-2MAT1-2-1, SLA20fewer than 2 genes could be modelled
MATDS544199.1:2,805,320–2,829,310MAT1-2MAT1-2-1, APN20fewer than 2 genes could be modelled
MATDS544201.1:1,572,566–1,586,388MAT1-2MAT1-2-1, SLA2, MAT1-2-100fewer than 2 genes could be modelled
MATDS544198.1:214,383–229,272MAT1-1MAT1-1-1, COX130fewer than 2 genes could be modelled
MATDS544198.1:2,610,005–2,612,937MAT1-2MAT1-2-1, COX130fewer than 2 genes could be modelled
MATDS544195.1:3,716,632–3,717,424MAT1-2MAT1-2-1, MAT1-2-41too few of the family's genes found

Provenance

Genome file
CposadasiiRMSCC2133.genome.fasta
Assembly
55 contigs · 27.9 Mb · N50 3.7 Mb
Genome SHA-256
4fb36898b2937eea72592cc06170dd0dd23431bba950846a8890c9079f5f0a23
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 33184, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 33184', 'routed_by': 'family taxid 33184 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:05:45Z
Run time
64 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits