CneoformansVNII Cryptococcus neoformans strain:VNII

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, CP091249:179445-311161

MATPredictFungiDBFAO1 (flanking_conserved) CP091249:179445-180804 + identity 90.2FAO1SXI1 (core_MAT) CP091249:181584-182945 + identity 81.2SXI1STE3 (core_MAT) CP091249:196706-198026 + identity 75.0STE3MFalpha (core_MAT) CP091249:224052-224165 - identity 86.84MFalphaRPL39 (core_MAT) CP091249:295120-295375 + identity 92.16RPL39PAN6 (flanking_conserved) CP091249:309266-311161 + identity 84.3PAN6LQV05_003235 174577-176762 -: unspecified productLQV05_003235LQV05_003236 177794-178873 -: unspecified productLQV05_003236LQV05_003237 179445-180804 +: unspecified productLQV05_003237LQV05_003238 181584-182945 +: unspecified productLQV05_003238LQV05_003239 184100-186352 -: unspecified productLQV05_003239LQV05_003240 186887-190563 +: unspecified productLQV05_003240LQV05_003241 192687-194113 -: unspecified productLQV05_003241LQV05_003242 194720-195850 +: unspecified productLQV05_003242LQV05_003243 196706-198026 +: unspecified productLQV05_003243LQV05_003244 199172-201818 +: unspecified productLQV05_003244LQV05_003245 202461-203049 -: unspecified productLQV05_003245LQV05_003246 204640-205254 -: unspecified productLQV05_003246LQV05_003247 205758-211952 +: unspecified productLQV05_003247LQV05_003248 213794-215388 +: unspecified productLQV05_003248LQV05_003249 219001-221592 -: unspecified productLQV05_003249LQV05_003250 226321-230002 +: unspecified productLQV05_003250LQV05_003251 230130-230821 -: eukaryotic translation initiation factor 3 subunit BLQV05_003251LQV05_003252 231017-232785 -: eukaryotic translation initiation factor 3 subunit BLQV05_003252LQV05_003253 236127-241961 +: unspecified productLQV05_003253LQV05_003254 242591-244813 -: unspecified productLQV05_003254LQV05_003255 245658-249645 +: unspecified productLQV05_003255LQV05_003256 250088-254462 -: unspecified productLQV05_003256LQV05_003257 254709-257429 +: unspecified productLQV05_003257LQV05_003258 257559-259632 -: dihydrolipoyl dehydrogenaseLQV05_003258LQV05_003259 259936-262882 -: unspecified productLQV05_003259LQV05_003260 263883-267052 -: unspecified productLQV05_003260LQV05_003261 268421-272118 -: unspecified productLQV05_003261LQV05_003262 274856-276457 +: unspecified productLQV05_003262LQV05_003263 276700-277561 -: unspecified productLQV05_003263LQV05_003264 279190-285180 +: unspecified productLQV05_003264LQV05_003265 285776-288502 +: unspecified productLQV05_003265LQV05_003266 289081-290142 -: unspecified productLQV05_003266LQV05_003267 296853-301263 -: unspecified productLQV05_003267LQV05_003268 302735-303257 -: unspecified productLQV05_003268LQV05_003269 304232-305333 +: unspecified productLQV05_003269LQV05_003270 306058-309048 +: nucleolar GTP-binding protein 2LQV05_003270LQV05_003271 309266-311161 +: pantoate-beta-alanine ligaseLQV05_003271LQV05_003272 311364-314012 -: unspecified productLQV05_003272180 kb200 kb220 kb240 kb260 kb280 kb300 kbCP091249
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
FAO1flanking_conserved179445-180804 +annotatedLQV05_003237unspecified productLQV05_003237 covers 100% of it on the same strand
SXI1core_MAT181584-182945 +annotatedLQV05_003238unspecified productLQV05_003238 covers 100% of it on the same strand
STE3core_MAT196706-198026 +annotatedLQV05_003243unspecified productLQV05_003243 covers 100% of it on the same strand
MFalphacore_MAT224052-224165 -novel—no FungiDB gene overlaps this MATPredict gene
RPL39core_MAT295120-295375 +novel—no FungiDB gene overlaps this MATPredict gene
PAN6flanking_conserved309266-311161 +annotatedLQV05_003271pantoate-beta-alanine ligaseLQV05_003271 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
LQV05_003239184100-186352 -unspecified product
LQV05_003240186887-190563 +unspecified product
LQV05_003241192687-194113 -unspecified product
LQV05_003242194720-195850 +unspecified product
LQV05_003244199172-201818 +unspecified product
LQV05_003245202461-203049 -unspecified product
LQV05_003246204640-205254 -unspecified product
LQV05_003247205758-211952 +unspecified product
LQV05_003248213794-215388 +unspecified product
LQV05_003249219001-221592 -unspecified product
LQV05_003250226321-230002 +unspecified product
LQV05_003251230130-230821 -eukaryotic translation initiation factor 3 subunit B
LQV05_003252231017-232785 -eukaryotic translation initiation factor 3 subunit B
LQV05_003253236127-241961 +unspecified product
LQV05_003254242591-244813 -unspecified product
LQV05_003255245658-249645 +unspecified product
LQV05_003256250088-254462 -unspecified product
LQV05_003257254709-257429 +unspecified product
LQV05_003258257559-259632 -dihydrolipoyl dehydrogenase
LQV05_003259259936-262882 -unspecified product
LQV05_003260263883-267052 -unspecified product
LQV05_003261268421-272118 -unspecified product
LQV05_003262274856-276457 +unspecified product
LQV05_003263276700-277561 -unspecified product
LQV05_003264279190-285180 +unspecified product
LQV05_003265285776-288502 +unspecified product
LQV05_003266289081-290142 -unspecified product
LQV05_003267296853-301263 -unspecified product
LQV05_003268302735-303257 -unspecified product
LQV05_003269304232-305333 +unspecified product
LQV05_003270306058-309048 +nucleolar GTP-binding protein 2