CneoformansJEC21 Cryptococcus neoformans var. neoformans JEC21
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, AE017344.1:1518721-1640752
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| PAN6 | flanking_conserved | 1518721-1520388 - | annotated | CND05630 PAN6 | pantoate-beta-alanine ligase, putative | CND05630 covers 100% of it on the same strand |
| MFalpha | core_MAT | 1534707-1534823 - | annotated | CND05680 MFalpha2 | pheromone alpha | CND05680 covers 100% of it on the same strand |
| RPL39 | core_MAT | 1540410-1540908 + | annotated | CND05700 RPL39alpha | large subunit ribosomal protein L39 | CND05700 covers 100% of it on the same strand |
| STE3 | core_MAT | 1577472-1578792 + | annotated | CND05800 STE3alpha | mating-type a-factor pheromone receptor, putative | CND05800 covers 100% of it on the same strand |
| SXI1 | core_MAT | 1637262-1638622 - | annotated | CND05950 SXI1alpha | sexual development regulator | CND05950 covers 100% of it on the same strand |
| FAO1 | flanking_conserved | 1639391-1640752 - | annotated | CND05960 FAO1 | putative fatty alcohol oxidase in the mating-type locus | CND05960 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| CND05640 NOG2 | 1520576-1523650 - | putative nucleolar gtp-binding protein |
| CND05645 | 1523787-1524355 + | hypothetical protein |
| CND05650 MAT3 | 1524399-1525545 - | mat3 pheromone repeat protein |
| CND05660 IKS1 | 1525690-1528817 + | serine/threonine-protein kinase |
| CND05670 BSP3 | 1529562-1533533 - | BTP/PZ domain-containing protein |
| CND05690 MFalpha3 | 1535299-1535805 + | mating-type pheromone alpha |
| CND05710 | 1542855-1544179 + | hypothetical protein |
| CND05720 | 1544299-1548888 + | conserved hypothetical protein |
| CND05740 PRT1 | 1548195-1551071 - | conserved hypothetical protein |
| CND05750 MFalpha1 | 1553349-1553710 + | pheromone alpha |
| CND05760 STE11alpha | 1556920-1561412 - | mapkk kinase, ste/ste11 protein kinase |
| CND05770 ETF1alpha | 1562072-1563736 - | electron transfer flavoprotein alpha subunit |
| CND05780 MYO2alpha | 1564625-1570904 + | myosin class v heavy chain |
| CND05790 STE20alpha | 1571061-1574076 - | ste/ste20/paka protein kinase |
| CND05810 STE12alpha | 1579482-1583736 + | ste-like transcription factor |
| CND05820 RPO41alpha | 1584694-1589127 - | conserved hypothetical protein |
| CND05830 BSP2 | 1589282-1592251 + | Armadillo/beta-catenin repeat protein |
| CND05840 LPD1alpha | 1592467-1595103 - | putative dihydrolipoyl dehydrogenase |
| CND05850 CID1alpha | 1595246-1598617 - | CID1-family polyA polymerase |
| CND05860 | 1599025-1602637 - | hypothetical protein |
| CND05870 RUM1alpha | 1602838-1609303 - | phd transcription factor |
| CND05880 | 1609560-1611001 + | hypothetical protein |
| CND05890 | 1610973-1612545 - | conserved hypothetical protein |
| CND05900 BSP1 | 1614806-1618125 + | protein of unknown function |
| CND05910 RPL22alpha | 1620941-1621957 - | large subunit ribosomal protein L22e |
| CND05920 SPO14alpha | 1623333-1629716 - | phospholipase D1 |
| CND05940 CAP1alpha | 1632807-1635392 + | capsular associated protein |