CneoformansH99 Cryptococcus neoformans var. grubii H99
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, CP003824.1:183859-286720
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| FAO1 | flanking_conserved | 183859-185218 + | partial | CNAG_06816 | hypothetical protein | CNAG_06816 overlaps 100% but on the opposite strand |
| SXI1 | core_MAT | 185988-187349 + | annotated | CNAG_06814 SXI1alpha | Alpha cell-type homeodomain transcription factor | CNAG_06814 covers 100% of it on the same strand |
| STE3 | core_MAT | 208374-209695 - | annotated | CNAG_06808 STE3alpha | pheromone a factor receptor | CNAG_06808 covers 100% of it on the same strand |
| MFalpha | core_MAT | 222931-223047 + | annotated | CNAG_07407 MFalpha3 | fungal mating-type pheromone | CNAG_07407 covers 100% of it on the same strand |
| RPL39 | core_MAT | 270550-271048 + | annotated | CNAG_01455 RPL39alpha | large subunit ribosomal protein L39 | CNAG_01455 covers 100% of it on the same strand |
| PAN6 | flanking_conserved | 284943-286720 + | annotated | CNAG_07414 PAN6 | pantoate-beta-alanine ligase | CNAG_07414 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| CNAG_06816 | 182119-185466 - | hypothetical protein |
| CNAG_12421 | 185870-187569 - | unspecified product |
| CNAG_12422 | 189214-189533 + | unspecified product |
| CNAG_06813 CAP1alpha | 189560-192241 - | O-glucosyltransferase, putative |
| CNAG_12423 | 192372-192704 - | unspecified product |
| CNAG_12424 | 192935-194380 + | unspecified product |
| CNAG_06812 SPO14alpha | 193324-200779 - | phospholipase D, variant |
| CNAG_06811 RPL22alpha | 200909-202001 + | large subunit ribosomal protein L22e |
| CNAG_06810 | 202602-204039 + | hypothetical protein |
| CNAG_06809 IKS1 | 204044-207447 - | IKS protein kinase |
| CNAG_12425 | 207817-208498 + | unspecified product |
| CNAG_06807 | 210557-211580 - | hypothetical protein |
| CNAG_06806 ETF1alpha | 212068-213909 + | electron transfer flavoprotein alpha subunit |
| CNAG_12426 | 214174-214705 - | unspecified product |
| CNAG_06805 | 214530-215070 + | hypothetical protein |
| CNAG_06804 BSP3 | 215850-219594 - | BTP/PZ domain-containing protein |
| CNAG_07406 | 222288-222701 - | pheromone alpha |
| CNAG_12427 | 223329-223829 + | unspecified product |
| CNAG_06971 MYO2alpha | 223846-230310 + | myosin class v heavy chain |
| CNAG_07408 STE20alpha | 230211-233167 - | STE/STE20/PAKA protein kinase, variant |
| CNAG_06980 STE11alpha | 233496-238299 + | STE/STE11 protein kinase |
| CNAG_07409 RPO41alpha | 238263-242729 - | DNA-directed RNA polymerase, mitochondrial |
| CNAG_07005 BSP2 | 242901-246213 + | Armadillo/beta-catenin repeat protein |
| CNAG_07004 LPD1alpha | 244073-247927 - | dihydrolipoyl dehydrogenase |
| CNAG_07410 CID1alpha | 248015-251440 - | CID1-family polyA polymerase |
| CNAG_07015 | 251935-255597 - | hypothetical protein |
| CNAG_07411 RUM1alpha | 256515-263236 + | histone demethylase JARID1 |
| CNAG_01457 BSP1 | 263567-266561 + | hypothetical protein |
| CNAG_01456 | 267859-269211 + | hypothetical protein, variant |
| CNAG_12428 | 269260-270268 - | unspecified product |
| CNAG_01454 STE12alpha | 271944-275730 - | transcription factor STE12 |
| CNAG_12429 | 276399-277159 + | unspecified product |
| CNAG_07412 | 277218-277511 - | hypothetical protein |
| CNAG_01452 MAT3 | 280007-281233 + | mat3 pheromone repeat protein |
| CNAG_01451 | 280948-281513 - | hypothetical protein |
| CNAG_07413 NOG2 | 281653-284758 + | nucleolar GTP-binding protein 2 |