CneoformansB-3501A Cryptococcus neoformans var. neoformans B-3501A
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, CM000043:145754-267812
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| FAO1 | flanking_conserved | 145754-147115 + | annotated | CNBD0440 FAO1 | putative fatty alcohol oxidase in the mating-type locus | CNBD0440 covers 100% of it on the same strand |
| SXI1 | core_MAT | 147884-149244 + | annotated | CNBD0450 SXI1alpha | alpha cell-type homeodomain transcription factor | CNBD0450 covers 100% of it on the same strand |
| STE3 | core_MAT | 207712-209032 - | annotated | CNBD0590 STE3alpha | a-factor pheromone receptor | CNBD0590 covers 100% of it on the same strand |
| MFalpha | core_MAT | 232996-233109 - | novel | — | no FungiDB gene overlaps this MATPredict gene | |
| RPL39 | core_MAT | 245597-245876 - | annotated | CNBD0680 RPL39alpha | large subunit ribosomal protein L39 | CNBD0680 covers 100% of it on the same strand |
| PAN6 | flanking_conserved | 266145-267812 + | annotated | CNBD0730 PAN6 | pantoate-beta-alanine ligase | CNBD0730 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| CNBD0460 CAP1alpha | 151378-153630 - | O-glucosyltransferase |
| CNBD0470 SPO14alpha | 157490-162969 + | phospholipase D1 |
| CNBD0480 RPL22alpha | 164632-165246 + | large subunit ribosomal protein L22e |
| CNBD0490 BSP1 | 168821-171584 - | protein of unknown function, encoded on mat locus |
| CNBD0500 | 174072-175467 + | unspecified product |
| CNBD0510 | 175533-176854 - | unspecified product |
| CNBD0520 RUM1alpha | 177362-183348 + | phd transcription factor |
| CNBD0530 | 184229-187367 + | unspecified product |
| CNBD0540 CID1alpha | 188203-191124 + | cid1-family polyA polymerase |
| CNBD0550 LPD1alpha | 191479-193553 + | putative dihydrolipoyl dehydrogenase |
| CNBD0560 BSP2 | 194445-197164 - | armadillo/beta-catenin repeat protein, encoded on mat locus |
| CNBD0570 RPO41alpha | 197757-201763 + | DNA-directed mRNA polymerase, mitochondrial |
| CNBD0580 STE12alpha | 203217-206414 - | ste-like transcription factor |
| CNBD0600 STE20alpha | 212727-215143 + | ste/ste20/paka protein kinase |
| CNBD0610 MYO2alpha | 215699-221542 - | myosin class v heavy chain |
| CNBD0620 ETF1alpha | 222834-224249 + | electron transfer flavoprotein alpha subunit |
| CNBD0630 STE11alpha | 225422-229418 + | mapkk kinase, ste/ste11 protein kinase |
| CNBD0640 PRT1 | 235485-238145 + | unspecified product |
| CNBD0650 | 238273-240269 - | unspecified product |
| CNBD0660 | 240720-241944 - | unspecified product |
| CNBD0670 | 242437-243642 - | unspecified product |
| CNBD0690 BSP3 | 253729-256582 + | btp/pz domain protein |
| CNBD0700 IKS1 | 257949-260636 - | serine/threonine-protein kinase |
| CNBD0710 MAT3 | 260976-261888 + | mat3 pheromone repeat protein |
| CNBD0720 NOG2 | 262882-265794 + | putative nucleolar gtp-binding protein |