CimmitisWA_211 Coccidioides immitis WA 211

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, RHJW02000001:7181499-7193622

MATPredictFungiDBSLA2 (flanking_conserved) RHJW02000001:7181499-7185431 + identity 100.0SLA2CIMG_00407 (core_MAT) RHJW02000001:7187209-7188105 - identity 99.6CIMG_00407MAT1-2-4 (core_MAT) RHJW02000001:7187345-7187467 - identity 34.146MAT1-2-4MAT1-2-1 (core_MAT) RHJW02000001:7189386-7189679 + identity 100.0MAT1-2-1APN2 (flanking_conserved) RHJW02000001:7190411-7192467 - identity 95.9APN2COX13 (flanking_conserved) RHJW02000001:7193087-7193622 + identity 99.2COX13DIZ76_012118 7175885-7177099 -: RNA polymerase II mediator complex subunitDIZ76_012118DIZ76_012119 7178184-7180927 +: SMP-LTD domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A6C1M859]DIZ76_012119DIZ76_012120 7181499-7185431 +: sla2 Src-like adaptor 2DIZ76_012120DIZ76_012121 7187209-7188105 -: unspecified productDIZ76_012121DIZ76_012122 7188550-7189250 +: HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A6C1M8J7]DIZ76_012122DIZ76_012123 7189386-7189679 +: unspecified productDIZ76_012123DIZ76_012124 7190411-7192467 -: Class II abasic (AP) endonucleaseDIZ76_012124DIZ76_012125 7193087-7193622 +: Cytochrome c oxidase subunit 6A, mitochondrialDIZ76_012125DIZ76_012126 7194283-7195017 -: unspecified productDIZ76_012126DIZ76_012127 7196260-7196724 -: unspecified productDIZ76_0121277178 kb7180 kb7182 kb7184 kb7186 kb7188 kb7190 kb7192 kb7194 kb7196 kb7198 kbRHJW02000001
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved7181499-7185431 +annotatedDIZ76_012120sla2 Src-like adaptor 2DIZ76_012120 covers 100% of it on the same strand
CIMG_00407core_MAT7187209-7188105 -annotatedDIZ76_012121unspecified productDIZ76_012121 covers 100% of it on the same strand
MAT1-2-4core_MAT7187345-7187467 -annotatedDIZ76_012121unspecified productDIZ76_012121 covers 100% of it on the same strand
MAT1-2-1core_MAT7189386-7189679 +annotatedDIZ76_012123unspecified productDIZ76_012123 covers 100% of it on the same strand
APN2flanking_conserved7190411-7192467 -annotatedDIZ76_012124Class II abasic (AP) endonucleaseDIZ76_012124 covers 100% of it on the same strand
COX13flanking_conserved7193087-7193622 +annotatedDIZ76_012125Cytochrome c oxidase subunit 6A, mitochondrialDIZ76_012125 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
DIZ76_0121227188550-7189250 +HMG box domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A6C1M8J7]